RNA id: CI01000047_05247473_05248489.mRNA


Basic Information

Item Value
RNA id CI01000047_05247473_05248489.mRNA
length 1719
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000047_05247473_05248489
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5246963 ~ 5248681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCATTAGAGTTTGGAGACCAGTTCTTTGGGGTGAAATATGTTTTTACCTCTGAAATTTCTTCGAAGACCAGTTATTAAGATGGGAAAATAAACTTGGATGCAGACTTGTGGAGATCAAGAACAAATTAGCTGGTTGTAGTAATACGTTTGAACTTCTCCAGCAAGGACTACAAACCGTTTTTGACCAGAAATGGAAACTGCGGTACCTTTAGGAATGTTTTATGACAACGTGTCGGTTTTAGACCTGGATGGTGCTGCGATAAACAATGTTTACATCCAGGAGGACTTTGATGCTTTCAGCATCACCATGGCCGTAATGTACCTGGCAGTGTGCATTGTGGGATTGGCCGGGAACTCGCTGGTCATCATCACCATTCTGAAGCTGGACAAAATGTCTTCGGCGACCACCGTCTACATTTTCAACTTGGCTTTGGCTGATGGACTTTTCATGGTAGGACTCCCGTTTATTGCTATCCAAAACTTCCAGGACCAGTGGATCTTTGGAGATGCTGTTTGTAAGCTGGTTATGGTTCTGGATGGCATTAATCAATTCACAAGCGTGTTCTGCCTGACGGTGATGAGCATTGACCGCTACATGGCGCTAGTAGACCCGTTGCGCTTCGCACGTTGGCGGACGCCACGACGGGCGAAGATCATCGCTGCATTAATGTGGTTTATCTCTCTATTTCCCGTGCTTCCCATGGCTATTCACTTTTCCGCCAACTACGGTTTGTGCACTGTTGACCCCCATGTTGCATCTGACACTTGGTGGTTGACCTTTCTCAGCTACACATTTGTATTGGGCTTTGCCTTGCCCTTCACCGTAATGATTGTGTTTTACACAGCGCTGTTGGTGACTCTGAGAAACACCACTTCTTCACTGGAGAGTCACCGGCTGGAGAAACAGGTAACCAAGATGGTGGTGGCGGTTGTGTTGGTGTTTGGCATCTGCTGGCTGCCGTTTTACGTCTTCAACTTTTGCTCTCTGCACCGTACGGATTTGGCGCTGTATTTCGCTCGTGGCTTTGAGTTTGTGGTGCTGCTGTCGTATTCGTGGAGCTGCGCCAATCCAATACTGTACGCGTGTCTGTCGGAAACTTTTCGGAGGCATTTCCACACCCTCCTCTGTCCCCACAAGAGCTCACCGACACACTGTGAGAGAGACACCGAGGGGTACGTCCTGCACGACACCAACGCACAAGCTTAGTGCGTCTTTGTTTTAAACATTTAGAGGGTTTGTGTTGCAATACATTCCCACTTTGTAAACAGACAATCCTTGCTTTCAGCACCACTTTTTTGTAGTGCAATTCAAAGTGCGAGCATGTGAGATTGCCTTTGGTTCTGAGCCATTAAGAAAAATACATGCAGACTGAGGCATGATAAGTGGAAGACGATAACTCATTTTTTCAGCACAAAAGCAAAGTTGACGTGGTTGATTTCCATGCAAAGGAAGGGTCGTGTTGTAAGGATGATTATGCAATTTCTGCCCTCCTGTACAAGTGCTGTCAAATTGATTGTGGACTTCTGGATGATGTCATGGTTGTCATGGCATCCAGCTTGGACCAAATATTTGAGGATTTTTGTGTGACTGTTGCTAAATGACACATGAATAAGGAATGTGGTTGTTAATTTGTTTGAAAACAGTTGATTTATTTGATGCTGATAGCCAACACTGCCATGGTTTAAATAACCATGTGTTACTAATTGTTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230876 lncRNA downstream 82094 5121926 ~ 5164869 (-) True G203429
TU230894 lncRNA downstream 133769 5112366 ~ 5113194 (-) False G203446
TU230893 lncRNA downstream 133769 5112622 ~ 5113194 (-) True G203446
TU230889 lncRNA downstream 147251 5099498 ~ 5099712 (-) True G203442
TU230884 lncRNA downstream 150282 5096086 ~ 5096681 (-) True G203437
TU230992 lncRNA upstream 46789 5295470 ~ 5317664 (-) False G203516
TU230993 lncRNA upstream 46789 5295470 ~ 5314304 (-) True G203516
TU230862 lncRNA upstream 138411 5387092 ~ 5388043 (-) True G203417
TU231051 lncRNA upstream 142041 5390722 ~ 5391012 (-) True G203574
TU231053 lncRNA upstream 144417 5393098 ~ 5393337 (-) True G203576
CI01000047_05235089_05236228.mRNA mRNA downstream 10690 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 23973 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05151314_05157285.mRNA mRNA downstream 88569 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05108733_05109209.mRNA mRNA downstream 137707 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_04840115_04844233.mRNA mRNA downstream 402730 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_05546059_05547988.mRNA mRNA upstream 296100 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05805272_05807974.mRNA mRNA upstream 556591 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05862382_05868129.mRNA mRNA upstream 613144 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05869347_05869519.mRNA mRNA upstream 620603 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 709210 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
TU230719 other downstream 370229 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 669998 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 960282 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1032533 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1260561 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 669827 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 794572 6043253 ~ 6043789 (-) True G203881

Expression Profile