RNA id: CI01000047_05315990_05318854.mRNA



Basic Information


Item Value
RNA id CI01000047_05315990_05318854.mRNA
length 2245
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000047_05315990_05318854
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5315584 ~ 5320411 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATAGAGCTCTTCAGTGCTTGTATTTAATGCAGAACTTTGCTTTTAGTGAATTTCTGATATACTTTCACCTGTGGTTGTGACATTGGCATTTCCTTCATATTAAATTTTAGAGATGAGAGGCTTTTGACTTCAGTTGACGGAAACTATTTCCTGGATTCCCTGAAAGAGCTGTTATTGATTTCTTTGCCAAAGCAAGGTGACGTGAGTGTCTTCAGACAGACATAGCCTTTAAAGTGAATATTCACTATTGATGTGAATCTTTTGGAAGCTGTCCTGCAGACTCTGTTCATTCATTCATTCAAGTGAATGCAAGATTTGCAGTGTTTATAATAAATATATATATGAATATTATCTTCATATCTGATGTTGTTGACCCACATTGACAGGAAAAACGCATAGATAATGGAGATAATGGGAAAGCAGGAGATTGTGCATAAAAAGGGTGTCGGGACGGACCCTCATATGGCTCTGGCTCTGCAACCTGATTCCAAACTGGCCAAAGAGAAGAAGAAGAGCTCTATGGCTGGCCTGTATGAGGAGGACGAGGAGGAGCTGTCCATCAGGATAGGTAGAGCAGGAGTTCACTCAGGCAAGCTCTTCTTCACAATCCCACAGTCTGCTCTCTCACTAAACCTCCTCACTGGAGGCAAAAGCACAGCAGTAGATGTGTGTCAGCTGTATTGATGGCTCTCTCTGGGTTCCCTGTTGGCTTTCCTTCCACTTCTGAATCACATTCCTGTGTCTTTTTGTTATGAACAAGCTCACTTTTTTAGGTTTCTCTCTGGGTTTCATAATTGCAGCTCTTAAGTCTCTTTAGTGTGCACTATGGAGTGTTGGTGGTGGGTTAAACTGCTTGGCCATGAATAGATCACAGAAGGATTATACAGTTCTCTCAAGTGGTGCTTAATGCAATACTTATAAAAATATATCAATGTAACTTTTGCAATTTACCGTCATGGAAAGGCGGATCAGACATATGCAGAGTTCAAGAGGGCTTTAGGTGATATTCATGGAAATGATAAAGACAGTAAGAAAGAAATATATATACACCAATCAGGCATGACATTCTGAGCACTGACAGGTGAAGTGAATAACACTGATCATCTCTTCATCACGGCACCTGTTAGTGGGTGGATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTTGATGTGTTAGAAGCAGGAAAAATGGACAAGTGTAAGGATTTGAGCGAGTTTGACAAGAGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGGAACAGTGGTGAACCGGCGACAGGGTCATGGGCGGCCAAGACTCAGCGAAGGCTGACCCGTGTGGTCCGATCCAACAGACGAGCTACTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGGTGTCAGAATACACAGTGCATCAGTTTGTTGTGTATGGGGCTGCATAGACACAGACCAGTTTGGTGACCCCTGTCCACCACCGAAAGCGCCAACAGTGGGCACGTGAGCATCAGAACTGGACTACGGAGCAATGGAAGAAGGTGGCCTGGTCTGATGAATCACGTTTTCTTTTACATCACGTGGATGGCTGGGTGCGTGTGCGTCGCTTACCTGGGGAACACATGGCACCAGGATGCACTATGGGAAGAAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGGGTCCTGCCATCCATGTGGATGTTCTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCATTCATGGAAACGGTATTCCCTGGTGTCTGTGGCCTCTTTCAGCAGGATAATGCTCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCTCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTGACATCTTGGTGTCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATGCCTCGACGGGTCAGGGCTGTTTTGACAGCAAAACGGGGACCAATACAGTATTAGGAAGGTGGTCATAATGTTATGCCTGATCGGTGTATATTAAAATGAAAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU229078 lncRNA upstream 195940 5119350 ~ 5119644 (+) True G201869
TU229072 lncRNA upstream 205382 5109988 ~ 5110202 (+) True G201863
TU229053 lncRNA upstream 206409 5108524 ~ 5109175 (+) False G201848
TU229054 lncRNA upstream 206409 5108524 ~ 5109175 (+) True G201848
TU229052 lncRNA upstream 217603 5097585 ~ 5097981 (+) True G201847
TU228919 lncRNA downstream 73020 5393431 ~ 5393859 (+) True G201717
TU229174 lncRNA downstream 205391 5525802 ~ 5625106 (+) True G201959
TU229239 lncRNA downstream 311804 5632215 ~ 5632418 (+) True G202021
TU229248 lncRNA downstream 329955 5650366 ~ 5650573 (+) True G202030
TU229251 lncRNA downstream 334337 5654748 ~ 5655020 (+) True G202033
CI01000047_05267807_05269108.mRNA mRNA upstream 46434 5267807 ~ 5269150 (+) True CI01000047_05267807_05269108
CI01000047_05185698_05212150.mRNA mRNA upstream 103360 5185698 ~ 5212224 (+) True CI01000047_05185698_05212150
CI01000047_05159134_05162486.mRNA mRNA upstream 152989 5157205 ~ 5162595 (+) True CI01000047_05159134_05162486
CI01000047_05104311_05105437.mRNA mRNA upstream 209687 5104201 ~ 5105897 (+) True CI01000047_05104311_05105437
CI01000047_05080583_05091592.mRNA mRNA upstream 223619 5079334 ~ 5091965 (+) True CI01000047_05080583_05091592
CI01000047_05339574_05340802.mRNA mRNA downstream 17274 5337685 ~ 5340872 (+) True CI01000047_05339574_05340802
CI01000047_05380032_05387598.mRNA mRNA downstream 58954 5379365 ~ 5388252 (+) True CI01000047_05380032_05387598
CI01000047_05438344_05441756.mRNA mRNA downstream 115130 5435541 ~ 5442287 (+) True CI01000047_05438344_05441756
CI01000047_05468225_05478050.mRNA mRNA downstream 146678 5467089 ~ 5478620 (+) False CI01000047_05468225_05478050
CI01000047_05856549_05859800.mRNA mRNA downstream 535704 5856115 ~ 5859942 (+) True CI01000047_05856549_05859800
TU228781 other upstream 833127 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 1613724 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 2227397 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2737587 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2996622 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 1495306 6815717 ~ 6816118 (+) True G202382

Expression Profile