Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU228919 |
| length | 429 |
| lncRNA type | read_through |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G201717 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 5393431 ~ 5393859 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU229078 | lncRNA | upstream | 273787 | 5119350 ~ 5119644 (+) | True | G201869 |
| TU229072 | lncRNA | upstream | 283229 | 5109988 ~ 5110202 (+) | True | G201863 |
| TU229053 | lncRNA | upstream | 284256 | 5108524 ~ 5109175 (+) | False | G201848 |
| TU229054 | lncRNA | upstream | 284256 | 5108524 ~ 5109175 (+) | True | G201848 |
| TU229052 | lncRNA | upstream | 295450 | 5097585 ~ 5097981 (+) | True | G201847 |
| TU229174 | lncRNA | downstream | 46296 | 5525802 ~ 5625106 (+) | True | G201959 |
| TU229239 | lncRNA | downstream | 152709 | 5632215 ~ 5632418 (+) | True | G202021 |
| TU229248 | lncRNA | downstream | 170860 | 5650366 ~ 5650573 (+) | True | G202030 |
| TU229251 | lncRNA | downstream | 175242 | 5654748 ~ 5655020 (+) | True | G202033 |
| TU229336 | lncRNA | downstream | 382381 | 5861887 ~ 5869731 (+) | True | G202111 |
| CI01000047_05380032_05387598.mRNA | mRNA | upstream | 5179 | 5379365 ~ 5388252 (+) | True | CI01000047_05380032_05387598 |
| CI01000047_05339574_05340802.mRNA | mRNA | upstream | 52559 | 5337685 ~ 5340872 (+) | True | CI01000047_05339574_05340802 |
| CI01000047_05315990_05318854.mRNA | mRNA | upstream | 73020 | 5315584 ~ 5320411 (+) | True | CI01000047_05315990_05318854 |
| CI01000047_05267807_05269108.mRNA | mRNA | upstream | 124281 | 5267807 ~ 5269150 (+) | True | CI01000047_05267807_05269108 |
| CI01000047_05185698_05212150.mRNA | mRNA | upstream | 181207 | 5185698 ~ 5212224 (+) | True | CI01000047_05185698_05212150 |
| CI01000047_05856549_05859800.mRNA | mRNA | downstream | 376609 | 5856115 ~ 5859942 (+) | True | CI01000047_05856549_05859800 |
| CI01000047_05887388_05899310.mRNA | mRNA | downstream | 406716 | 5886222 ~ 5899612 (+) | True | CI01000047_05887388_05899310 |
| CI01000047_05911739_05912506.mRNA | mRNA | downstream | 432133 | 5911639 ~ 5914944 (+) | True | CI01000047_05911739_05912506 |
| CI01000047_05927095_05951348.mRNA | mRNA | downstream | 447589 | 5927095 ~ 5951356 (+) | True | CI01000047_05927095_05951348 |
| CI01000047_05983785_06007139.mRNA | mRNA | downstream | 504279 | 5983785 ~ 6007342 (+) | True | CI01000047_05983785_06007139 |
| TU228781 | other | upstream | 910974 | 4415813 ~ 4482457 (+) | False | G201599 |
| TU228535 | other | upstream | 1691571 | 3696516 ~ 3701860 (+) | True | G201387 |
| TU228278 | other | upstream | 2305244 | 3018705 ~ 3088187 (+) | True | G201186 |
| TU227053 | other | upstream | 2815434 | 2520596 ~ 2577997 (+) | True | G200076 |
| TU226970 | other | upstream | 3074469 | 2316863 ~ 2318962 (+) | True | G200003 |
| TU229634 | other | downstream | 1336211 | 6815717 ~ 6816118 (+) | True | G202382 |
