RNA id: CI01000047_05862382_05868129.mRNA



Basic Information


Item Value
RNA id CI01000047_05862382_05868129.mRNA
length 6855
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000047_05862382_05868129
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5861825 ~ 5868679 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACACAGTACAGCAGCTGCAAACAAATGACTGCATGATGACTAATTTGTGCTGTCAGGATTGTAAATAATGCCGAAAAAAATGTTGGATAACTTCTTTGACACGATTCAACAATGTTGACATTTCAGGTATAGAAGTATTCTGCTTTAAAAAGTAGATCTGTTGAACAGGGCACACTGAAAAATCCCCTAAATAGTTTGAAAATCCATTTGTTTTAACAAACGATTGCCAAGGGTTGTGCAGGTGGCCTGTGTATGTGAAAGGGCATAGAGACATCTGCCTTCTTCTAAAAATAGTTGGTGTTTGGCATGGTGTATCTTTCTTTACTGTACATAGTCACAGGCTGGATTACCAACCACATCAAAACAACATTTTTTTATAGCAGTTTTTAAATTATTTTTAACTGTGATTGCACAAACTGATATATTTTCTATTTCCTTTTTTGCAGGAATATCACAATGTAATCTCCAATATGTGGTGATGACAATGCAAGAAGTGTCAAGCCAGGTCAATTCTGCATCAGACTGAAGGAACTGGGCAAACACATTCATCATGAGCAACCAGGAGAAGCGTCAAAGGACAAGCATGCAACACCTCCGCTATCTTGATAGCTTTATGGATGAAATAGACCGTGAGGTCATGAGCCTGACGGATCGAGCTTTCAAGAGTCTGTGCATCGGAGATGAAGCAATCTACAATGACTCAGAGTTTTCCCCTTCTCCAGTCAGCTGCCACAAGCCAGTGGTGGAGGACGTCTCAAAAAAGACTCAGGAGAGCTCAGTTTCTGCTGTCAAAAAACTTAATTCTTACCCCCTTAATGGAGCGAATGATTTATTGAGTAGATCAAACAAGTCATCCAAAGACTCTGCACTTTTTGCAGTATTTTCAGCCAAAAAGAACGGTGAGAGCACCAAGATGACAAATGGTGATTCATGGGACAAATCGGCTCTACTCAGCATCCAAAGAGAGCTCTCTGAGTTTTCTTCAGATTACCACAGTTTAACAGCAGTACATCTTTCCCAAGCCAAGAATCATCTAAAATCAGATGAAAAAGGATCTGGCAAGAAATCAAGCAAGGATGTATCGCTTCCCTCGGGAAAATCCTCTAAGTGTAAACACAGCAAAAACAACAAACTGAGAAAACTGAATTCCATCAACTTTTTCCTCCACAGTGAATTCAGTCCGTTCTTGTCATGGAGGGATTTTAATAAATTCTCCATTGGTCAGGAGCACATACCGGAGATTATGTTAAGCAACAGGCGACCTGAATGGTATGATTCACCTCTTTACAAAGAGTTAACTGCGGCACATGGACACTATCAATTAAGTTTCCCCCCATCAGTGGATAAAGAAGTCGAAAAGTGTCCTAAACAAAGTGAGACTCAATCACAGCTTGCATCTGTACAATCCGCAGCACCTAGTGTACCCCCAAAACCAGAGAAAGAGTCCAAGCACATTCAGCATAATATTCCTACAAAGGCCCCTCCGCTTGCCTCTGAACAGAGATGTAATTCAGAAAGGGTGGAACCTTGTGTTCCCTGGCGAAAAAGCAGAAGTAGAGCAAAAAGTGCTGCTCCTGTGGGGCATTCCATCAACTCAGCAAGCGCTGAAGAAGGGAGTGCACAGGCATTTAAAGAAGTGAAGACAATAGAGGACCAGACCTCCGCTAGTTCAACTCCTTTCAGTATTTCACAGCTGTTGACACCAGTGATACCCTCCAGACATGGGACAGGAACCTCAGAGATACTGCTCTCACCCACTACCCTGGAGCTCCCACCACTCCCGGAGAGAGAACTGCATCCGTCACCTGAGATTAAAAGAGAGGGGTACAAATCCATAGCATCAAGCTTGTTGTTCAATCTCAAAGACAATAGAAAACGGGTTAAGACAATGTACAGTCCACCTAAGTTTAAAGGTTTGGATGTGGCAAATCAAAGCAAAGGGTCTCCCCAGCCTGAAGTGTCAAAAGATGGGTTTGAAATACCAGAGATTTCAGGAACTACAACTATTTCATCTGCTCGTCACAAAGCCATCATCTCTCAGATGAGTCCCTTGTTGGAAACTGCAGACACTCAAACTTGCTCTCCTGCAAATGACAGGATGCCAGATGACTATTTGGCATTAAGCCTGCTTCAATCTGGAAAATTAAAATCAAACAGGAGCCCTGCAGCTAACAAGGCATCTTACCCCTCATTACAACTTTACAGAAAAACTAGTCCTGAGGAGATTAATATTAGAGCAAATGCTCAAACTGTGGTTGACACCAGTTCTCAGTCTTTCACAGATAAAGCTAGCAAAGATTGTGACGCAGAGCATAATTTTCCAAGTAAATTGTTTAAAAGTGCAGAGTTGCAAAGCAAAAATAATCCTGTAGAGTCAATGCTAAATGCCCCAAAACCCATTGTAGGTTTACATAGCGAAATGTCTCTTGAAAACAAATCTGGTAAAAGTCTGAGTGTAAGTTTAACAAACCTGGAAGAGCAAGTCATCAGTGATGGTACAAATCAAATTATGGACAGGTTGAAAACTAGAGAAACAGTCAGTGCACAGAAAAGCCCCGTTAAAGACAAGGAACCACACGGAAAGGAGGCAGGAGCAAAGCATGTCTTTTCTGCACGACAGAACAACTACATTAAAAGTCAGAGATTTGTAAGTACAGATGATGATAATCATCGTGATGATAGTTCTAATGCACCGTTGACTATACAGGATAAAAAGGAAAATGACAAATGGTCCAGGCATTCCAAAAATCCAAAAACAAAAGAGATAAGACAAGAGACGCATAATGCAAACACACATAAAGATAAAGTAATGGATGGACCACAATTGAAAGAAAGGGTTCATGTAAGAGGAGAGGCTAACACAGCTAAAGACCAGAGCAGTACAACATCAAAGAGTGGTTTGGAAACTCAAAGAGAGCAAAAAGGAAACTCTGAAACAATGAAAAGAAACATTTCTGAAAAGAGAGCACTATTTGCATCAATGGAACAGGTGCCTAATAAGACAAATGCACCCTTAAAGAAAGAGAATGCTGTTATCGATAAGTACAACCTGGCCAAAATGGCTTTAGAGGAAGTAATTGCTGAACGAGAACAAAGAAAGTTGAAAAGTAAAGAGGTCTCAAATGCAGGACGTTCACTCATTGATATAAAAAGAGTCGATTGTGAAAAACCTCAAGGTGGTAGTGAGTTACCCACCAGTGGAGAGGACCAACTGTCTAGTATGTTCTTGCTGAATGAGAGGGGGAAAAGTGCAAAAGATGGCAAAGGTCAGAATACTGTGTCTGCTTTTAAAACAAACTGGCAGACTGTTCAAACGATGTCAGAAGACATGGCCAAACATGGTGAAAGTCATGTGCCTGAGGTAAAATTAGCCAGGCCCTGTAAGCAGGAAGCATCTATTGGGCAGTGCCAGCATGCAGGACCTATAAAATATGAGAGAGACAGATTGTGCCTAAACAATCAAGAAAGCAACACAGATAATGTCAGCAAGGATGATAAAATATGTCAAAAGAAAGAGTTGAAGAATAAAAATATAAGTCATGCAAAGAAATGCACAAAAACAGCTGATCAATTGAAAAGTAGCAATATTCGCAGTGTGGAACAGTGTGAGGAAGAGTTGGGCGTTAGCTCCTTTAAACCTGAGATACCCCCAAGAAGAGGGAGAAGTAATTCTCAAAGTAATGACAGAGTAGGTGAAAAGAAAGAAAGTAATTTTGACTTTAAAAGAGAAGGTGACACTGCAGTCAAAACTGAGGAAATGGAAAGTAGGGAAGTTAAGAAAGTTCAGTCAAGACAATCAAAGAATCGAGGCCCTGTAAGAGGAAATGTATCGGCTCTGAAAGAGAAATATGACAAAGAAAATAAGGTCAACCTCAAGGATGTTCAGAAAGGTCAGCCTGTTGAAGGTACAAGCTGCGAAAAGCCTACAGAAGAGGGACGCAATGAAAGGGCTGCAAAAGACAAAATTAAACATAAATTTGTTCCACCAAAACTCACAGTCAGTGATCCTGAAAGTGGGACTTATTCCATTATCTACAAGGAGATGGATTCAGAGAGTGAAAGAAAGTCTAACAGCTCCTCTAAAGAATCAGAAAGAGTTGAGGAACATTCAAAGAGGAAACACAGTGTCACCCAAGACTTCCAAAAAGCTATACATGATCTCACAAACAACACAAATGAAGAAATGCAAGACAACAAAGTAAAAACGAATGAGAAGGAGGGGGGTTCTGTAAGTCCGAAGGAGTTCGGAGACAAGCAGAACAAATCCAAAGGTCCTTGTAAAAGCTATGTGAAAGACTTCTTTAGTGGACTTCTTGGAATTTCAAGCTCAGAAAGGGGAAAAAATGTAGATGAACATGAGGAGGAACTCTCTGAAACACTGTCTTCAGAGTCTTTCAAACCCGACAAAGCCAGAAAGGACAGTATCAAAGTATATGATATTCTTGGACAATCTCATACTGTATCCTCATCAAATGGTAAACAAACACATCACAGCAGTCGATCTTCAAACTCATGTGAGCTCTCTCTATTGCATGAATCAGAACAGGGGGCGCAATCACAACCTGAAGAGTTGGTAAATAAAGCAGAGGTCTGCTACATGAAAGACAAAGTTGATGGAAAGATGAAGGAGAATTTCCAGAAACCAACAACAGATTCCTGCTCCTTAAGCAACCATGAAAGTGAGCCAGATGTTTCTCCACCGAGTGATGTGGACAAAAGGGGATGGGTGCAGAGCTTGATTGAGTCAGCTAGAAACTTAACACAAATATCACACAGTCATACTTCCTCTAAGGATCAACCTGAAATAGATCAACAGCTGTCTCAGAAGGACCACTTGAATGGATCTGAGAAAGATAAGCAAGATCTGGACCTCTGCAAGGACTGTGTCCATTCTCCAGTTGCCATACCATCAGTCAAGACCCCCCAACCAAACCAACCAGCAATGCATTTCTTGTCCCTTCCGACAAATCACCTGGTCAAAGAGGGAAAACTGTCCGTTGGAAGTGCCTCTGTGTCTGAGGAGGAGGAGAGGCGCTCTGCTGTGAGCACTTTATCTGAAGGCCTGGACAGCTATGAAACAAGCGGAGGGGATACAATGGAGGAGAACTTCTCTGGCATTGCACCAGCAGAGGATGCGGAGGGATCCAAGGCACCCAGCGAGAGATCTGCTTCAGCCTGCAGCGGAAATGATAGTAATGGTCAGAACAAGCCGCCTGTTGTACCTCCAAAAACTGAAAAGGCTCTACGCCGAGCCATGAAGCTCACCACACGGAGGATACAAAAGGCTGAAGCTAAAAGCAAAACTGAGCGTAAAGGGAGGAGCAGTGACAAAAGTGTCAGTCACAAGGCTGAGAGGAGGCACCACAGCATCGACCAAGTACTTGACAGATCAGAACACAGCAGTGACAGAATCAGCAGTAAACACAGCGAGCATCTCAATGACACAAATGAGCACAAAACTCAAAGAAGCGAGAAGCATGCTAGACGCCATAGTGGTCACAAGAGTCAAATAGAAGAGAATGAACCTAGTAGAAAATTGCAACATGCAACCAAAGACAAAGAAAGACAAACCAGCCAAACTGGTGACTTAAAGGGCCATCGCACTGATGGCACATCAAACCACGGGGATCATTTGGGGAACGGCAATATAAGTAATGACAGTGATCGATTAGGTCGAAGCAATGAGAAACACTTGCCCAAGAAACTGGAACGTAGGACTCAAAGTCTGGATAGATTTCTAAGGGAAAAAAACGAAAACATGTCAAGTAGCACTGTTGGTTTAATAGAAGGATCACAGTACTCTACTCCAAAGGCGTTACCTTTGCGCCAAAACAGCATTGAACATACTTATGCACCAACCACTAATCTTGTAACACAGTCCTTCCCGATCACCCAGAGAAAGCTTTTACAGGACCCTGACTCAGGACAGTACTTTCTGGTGGATATGCCAGTACAGGTCAAAACGAAAACTTTCTTTGACCCAGAAACTAAAAGTTATGTGCAACTGCCAGTACAGTCTCCTGAGGCTGCCGTGCGACAAGCTCCGCCATTGGAGGTTATGAACACGCCACCACTTATGCTGTATCATGGGTTTGTTCCCATGCCCGTGTCATCACAGAAGTCTGTTGTCAGGACTGGAGGATCTATGATTCCTCCCGATGACCTGGAAGACTTTGAACCTAGCAGGAAACAGGAGGACTTTTATCAAATAAATAATGAAGAAGTAAATCCTTACATTGAGCCAGTGTATATATCACAAGAACATACACCTGAAGAGGAAATTGATAGTGTGAGATGACAACATCCAGACTGAACCAGTGGATGGTCTAGAGATTGAATGTGACTGAAATCAGGGATTTGTTTTGTTTGTAGATGAATGCAGTTTTCACCATTTCCAACTTGCAGTCTGGTGTGACATGGAAAAGTTTTTGTAGTATGGATGCTGTTCATTGTTTGTAGTACACAAGACTTGGATTGTAAATGTTTATTTCTTCTTAAAGTAAGGCAATTAGCTAGTTCTCTTACTGTTAAAAGCACTTGTCTATTTGTAACAGCAGGGTTGAGATTTGGATTCGTGCCTTATTGAAAGTAGCTTTGCGTTCATAAAAATATTTGATCATTATTTAACAGATTATTTTGATACATCTTGTATTTGAGGTTTGGAAATACACTAGTCCACAGTATTTTTCACAGCAGAAAAGTATTGTAAAAATTAAGAGATTAACATAGTTAATGTGTTTTATATGCTTAAAATGGTGTATTTGACAAATGCTGATTGCATCACTTTCCAGGGTGCATTTTGGAATGAATCCATTTAAATGGATTGTTGCTTCAGAAAAGAACCATTCCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231249 lncRNA downstream 57667 5803136 ~ 5804158 (-) True G203764
TU231199 lncRNA downstream 207737 5653017 ~ 5654088 (-) True G203720
TU231198 lncRNA downstream 208867 5652745 ~ 5652958 (-) True G203719
TU231192 lncRNA downstream 217288 5644335 ~ 5644537 (-) True G203713
TU231191 lncRNA downstream 218858 5642745 ~ 5642967 (-) True G203712
TU231358 lncRNA upstream 107231 5975910 ~ 5976256 (-) True G203853
TU231362 lncRNA upstream 112121 5980800 ~ 5981561 (-) True G203857
TU231363 lncRNA upstream 114065 5982744 ~ 5983064 (-) True G203858
TU231364 lncRNA upstream 115902 5984581 ~ 5984887 (-) True G203859
TU231369 lncRNA upstream 123098 5991777 ~ 5992089 (-) True G203861
CI01000047_05805272_05807974.mRNA mRNA downstream 53851 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05546059_05547988.mRNA mRNA downstream 313469 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05247473_05248489.mRNA mRNA downstream 613144 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05235089_05236228.mRNA mRNA downstream 625552 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 638835 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05869347_05869519.mRNA mRNA upstream 605 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 89212 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
CI01000047_06139714_06142702.mRNA mRNA upstream 270938 6139617 ~ 6142702 (-) True CI01000047_06139714_06142702
CI01000047_06184569_06194319.mRNA mRNA upstream 315393 6184072 ~ 6195664 (-) True CI01000047_06184569_06194319
CI01000047_06216778_06234561.mRNA mRNA upstream 346947 6215626 ~ 6235272 (-) True CI01000047_06216778_06234561
TU230719 other downstream 985091 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 1284860 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1575144 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1647395 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1875423 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 49829 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 174574 6043253 ~ 6043789 (-) True G203881

Expression Profile