RNA id: CI01000047_06978552_06982232.mRNA



Basic Information


Item Value
RNA id CI01000047_06978552_06982232.mRNA
length 1386
RNA type mRNA
GC content 0.51
exon number 5
gene id CI01000047_06978552_06982232
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6978448 ~ 6982542 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTAAAGAGACACTAACACGCGCCGCCTAGCGGTAGTGTCGCACACGACACAACGGGTCACGTGATTTGTCGGCTTCTTTTAAATGTAACACACTCAGGAAGTGAACTTTTTTTTTTTCCTCCAAAGGGATTCAGCAGATTTGTGCCAAATGTATTTGTCGCTCAGATTATACTTAACAAAGATGTGTGTGTCTAAACAGCACCACACCTTCAGGTTTGTTTGTTTGTTAGTCTGTGGAATAGAGGGCTGATCATGTTTCTGGAGCAGTATCTGTTCACAGCGCTCACACTCAGTCACACACTGTCACTATGTGTCATCTACAGATGAGGACGCTGCTCTTCGTCGCTTGGCTGCTGTTTTACGTGTGTTTTCTACTGGCGATGCGAAGGATGTGGACTGGAAAGTATGTTCGCAGTCCACTGGCTCGATCTCTGTTCATGAACATGGTGACTGAGACGGACACACCTGGACATGAAGCCCAGCAGTGGTACCACTGCTGTCCAGACCTGCTGGGAGAAGGAGTTCGCTCCGTGTTTGTTCAGAGCCACCTGGATGCGGAGACGCAGGCGTTCCTCCATAAGAGCGAGGAGAAATCCAGCTGGCTTTTCACGCAGCTTTACCACTCGCTCTTCTCCACCATCCTCAGCCCCGTCATTTCTCGAACCTCAATCAACGGCTTTCTGGGCCGCGGCTCCATGTTTGTCTTTTCCAATGAGCAGTTCCGGCGTCTCCTCCGGATCGGGCCTGAATGGAAAGGACAGTGGATGCTGGATCTGGGAGCCGGTGATGGAGGCGTCACAGAAGTGATGGGCTGTCACTTTAACGAGGTGTACGCCACAGAGGTCTCCACGCCGATGAAATGGCACCTACAAAGGAAGAATTACAGCTTGTTGGGAATCGATGAATGGCACAGAACAGGCTTCCAGTACGACCTGATCAGCTGCCTGAACCTGCTGGACCGCTGCGACGAACCGCTTCAACTGCTGCAGGACATTAAGAAATCCCTGGTGCCAGAAACGGGACGGCTCGTCTTAGCAGCTGTTTTGCCTTTTCAGCCGTATGTGGAGACGGGCGGGAGCTGGGTGCGACCCAAGGAACATATCAAGGTGGAGGGCAAGACGTGGGAAGAGCAGGTGACACACCTGAGCGCAGACGTGTTCCTGAAGATGGGCTTTGAGCTGGAGGCCGTCACACGCCTGCCGTACCTGTGCGAGGGAGACATGTACAAGGATTACTACGTGCTGGACGACGCCGTGTTCGTGTTAAAACCTCAGGAATGAATGAAGACCAAACATCAAACCTCTGTTCTGAAACGCAGTTATTCTGGGCTGAAGCTAAAATTAAATGGCTTAGTTTCTCGTCTGTTACATCTCAGGAAAATAAA

Function


GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231473 lncRNA downstream 80296 6896001 ~ 6898152 (-) True G203947
TU231665 lncRNA downstream 85268 6892834 ~ 6893180 (-) True G204129
TU231634 lncRNA downstream 125645 6852603 ~ 6852803 (-) True G204098
TU231633 lncRNA downstream 126610 6851639 ~ 6851838 (-) True G204097
TU231631 lncRNA downstream 128316 6849702 ~ 6850132 (-) True G204095
TU231675 lncRNA upstream 35581 7018123 ~ 7018330 (-) True G204139
TU231685 lncRNA upstream 80664 7063206 ~ 7063431 (-) True G204149
TU231461 lncRNA upstream 137911 7120453 ~ 7128069 (-) True G203935
TU231706 lncRNA upstream 301997 7284539 ~ 7285427 (-) True G204167
TU231714 lncRNA upstream 313998 7296540 ~ 7296838 (-) True G204175
CI01000047_06968741_06972782.mRNA mRNA downstream 5598 6968324 ~ 6972850 (-) True CI01000047_06968741_06972782
CI01000047_06958499_06967108.mRNA mRNA downstream 10614 6957983 ~ 6967834 (-) True CI01000047_06958499_06967108
CI01000047_06900704_06954882.mRNA mRNA downstream 23566 6900704 ~ 6954882 (-) True CI01000047_06900704_06954882
CI01000047_06843638_06844618.mRNA mRNA downstream 133830 6843370 ~ 6844618 (-) True CI01000047_06843638_06844618
CI01000047_06667661_06692521.mRNA mRNA downstream 285927 6667220 ~ 6692521 (-) True CI01000047_06667661_06692521
CI01000047_06993737_07007548.mRNA mRNA upstream 11180 6993722 ~ 7007548 (-) True CI01000047_06993737_07007548
CI01000047_07010651_07017023.mRNA mRNA upstream 27987 7010529 ~ 7017023 (-) True CI01000047_07010651_07017023
CI01000047_07072890_07079236.mRNA mRNA upstream 90003 7072545 ~ 7079236 (-) True CI01000047_07072890_07079236
CI01000047_07137958_07149332.mRNA mRNA upstream 154842 7137384 ~ 7149332 (-) True CI01000047_07137958_07149332
CI01000047_07350018_07350608.mRNA mRNA upstream 366589 7349131 ~ 7350844 (-) True CI01000047_07350018_07350608
TU231390 other downstream 934659 6043253 ~ 6043789 (-) True G203881
TU231342 other downstream 1051104 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 2101714 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 2401483 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 2691767 4278908 ~ 4278976 (-) True G203126

Expression Profile