RNA id: CI01000047_07445474_07451503.mRNA


Basic Information

Item Value
RNA id CI01000047_07445474_07451503.mRNA
length 2406
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000047_07445474_07451503
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 7444859 ~ 7451503 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGGTGAGCGGGATGTCAGGCTCGGTTGTCGCCCGGCTCGAGGGCCGAGAGTTCGAGTATCTGATGAAGAAGCGCTCGGTCACCATCGGTCGGAATTCGTCACAAGGCTCCGTGGACGTGAGCATGGGCCACTCGAGCTTTATTTCACGGAGGCACCTCGAGATTTTCTCCGCCGGCGAGGATGGAACGGGAAGCGGAGATTTCTATCTTCGATGCCTCGGCAAAAACGGGGTGTTCGTGGACGGGGTGTTCCAGAGGCGAGGGGCGCCTCCTCTGCAGCTTCCCCGCATGTGCACTTTCCGGTTTCCCAGCACAAATATCAAAATTACATTCACGGCCTTGTCCAGTGACAAGAGAGAGCGCAGGAACGCCCCGGAGTCTCCTGTGAAAGCGGTCCAACCCCAGATCTCGCCGCTGACCATCAACATTCCCGACAACATCGCCCACCTGATGAGTCCACTCCCATCTCCGACCGGCACAATCAGCGCTGCCAACTCATGTCCGTCAAGTCCGCGAGGGGCGGGGCTTTCCAGCTACAAAATGGGTCGCGGCCTCACAGCGGATCTCATCAATGAAAACTCCCAATCCGAGAACGACAAGGAAGCTTCCGGAGGAGACAGTCCGAAAGACGACTCCAAGCCTCCGTACTCGTACGCACAGCTCATTGTTCAGGCTATCACAATGGCTCCAGACAAGCAACTAACACTGAATGGAATATATACCCACATTACTAAGAATTATCCATATTACAGGACGGCAGACAAGGGCTGGCAAAACTCGATTCGTCACAATCTGTCCTTAAACCGCTATTTCATCAAAGTGCCCAGATCTCAGGAGGAGCCGGGCAAAGGCTCGTTCTGGAGGATCGACCCCTCGTCCGAGGGAAAGCTGATCGAACAAGCTTTCCGGAAGCGCCGGCCGCGCGGCGTTCCCTGCTTTAGGACTCCGCTCGGCCCGCTCTCATCCAGGAGCGCTCCAGCATCTCCTAACCACACCGGGGCGCTGTCGGCCCACTCCAGCGGCGTTCAGACTCCAGACAGCTTATCGAGAGAAGGCTCGCCTGTTCCCATGGACCCTGATCCCACGCCTGCTCCGGCTCCAGCCATTCAGCCCAAACTAGCAGTCATACAGGAGGCCTGCTTCGCACAGAACGCTCCAGGTTCACCTCTAAACACCCAACCCGTTCTCATCACAGTCCAGCGGCAGCTTCCGCAGACCATCAAACCCGTGACCTACGCTGTGGCCACACCAGTGTCCGCTGCCGCTTCCCAGCAGCCCGTCATGCAGACGCTGCACGTGGTGCATCAGATCCCTGCGGTGTCCATGGCAGCCGTGACCGGACTGTCTACGAGCAACACGCACGTGGCGGAGCCCGTGTTCACCCAGTCCAGCATCGTCACAGCAGGAGCGCACGAGAACGGAGAGCACCAGGAGGTCAAAGTGAAAGTGGAGCCGGTTCCCGCCATCACAGCCTCGTCTATAGGTGGGACGGCTCGTATTCTCCAGACGTCGCAGTCCGGCCCCATACAGACGGTCACTATAGTGGGCCAGCATCAGCTGCCCGTCAAGGCCATCACGCAGAACGGGACGCATGTGGTCACGGCGGTGCAGGGCTCCGGCAGCACGGCGAGTCCGCTGCACATGCTGGCGACGCACGCCTCGGCCTCCGCGTCCCTCCCCACCAAACGGCAGAACGGAGAGCAGGCCGAGCAGCCCGACGCCAAGAGAGTGAAGACCGAAGCCGTGCCCGTCACCGCAGAGAGAGACAAGCAGACTGACACCGACTAGGCCAGCCGTCTCTGACCTTTGACCTCAACGCGTTTTTTTGTTTCTCCCCGCCTGCCGCGCACCTGCTGCACCCGCGTCACCCGTTAATGAACCCAAGGTGCCAAATAGTGAGGTGAGATGAAATGTCAGTGGTTTTTGGAGAGATGTGAGGATTAGATTATGAGAGAAAGAGAGCGAGAGAGAGCGATGCTGTTCTGAAGGAGGAGGGAGGGACCTTTTACACCAATAGGTAAATACTCACAGATATATGCACACACATATATTAATATAGCCTACTTGAAGTTACAGAATGAAATGTATTGTTGTTCCTGTCTGGGCGTATACCCAGCAGAGAAGGTTTCCATCACGAGAGTCTCGGGCTGAACGCGGATGAAGAGCAAACAGACGAACCCCTTTTTGTGTTCCCTGAACAAACAACCGGCCAATGACCGACATAGATATTTATGTGATTGTCACGCATGTGTATCAGATGTGTGCTCGCCGTTCCCAGAGTCCTGAACATTCAACTGAGACGACAGGTCAGAAACGGACTTGCCAAACATCATTTCAGACCGATTAGCTCTTAAAATGTGAACCTGCTCACCATTTCAGCTTCATATTCACACATGGAAAAAA

Function

GO: NA

KEGG:

id description
K09404 FOXK; forkhead box protein K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231469 lncRNA downstream 76131 7355166 ~ 7368728 (-) True G203943
TU231731 lncRNA downstream 117013 7327497 ~ 7327846 (-) True G204192
TU231725 lncRNA downstream 133197 7311449 ~ 7311662 (-) True G204186
TU231721 lncRNA downstream 138265 7305979 ~ 7306594 (-) True G204182
TU231720 lncRNA downstream 141569 7303046 ~ 7303290 (-) True G204181
CI01000047_07436294_07437420.mRNA mRNA downstream 7140 7435732 ~ 7437719 (-) True CI01000047_07436294_07437420
CI01000047_07389650_07393323.mRNA mRNA downstream 51106 7389143 ~ 7393753 (-) True CI01000047_07389650_07393323
CI01000047_07351900_07353699.mRNA mRNA downstream 91106 7351867 ~ 7353753 (-) True CI01000047_07351900_07353699
CI01000047_07350018_07350608.mRNA mRNA downstream 94015 7349131 ~ 7350844 (-) True CI01000047_07350018_07350608
CI01000047_07137958_07149332.mRNA mRNA downstream 295527 7137384 ~ 7149332 (-) True CI01000047_07137958_07149332
CI01000047_07453486_07457736.mRNA mRNA upstream 1285 7452788 ~ 7457949 (-) True CI01000047_07453486_07457736
CI01000047_07462130_07463407.mRNA mRNA upstream 10230 7461733 ~ 7463407 (-) True CI01000047_07462130_07463407
CI01000047_07511828_07514793.mRNA mRNA upstream 59452 7510955 ~ 7514793 (-) True CI01000047_07511828_07514793
TU231390 other downstream 1401070 6043253 ~ 6043789 (-) True G203881
TU231342 other downstream 1517515 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 2568125 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 2867894 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 3158178 4278908 ~ 4278976 (-) True G203126

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009813 False 2962 mRNA 0.56 9 NC_007123.7 32370 ~ 42214 (-)
bowfin (Amia calva) AMCG00013149 True 1881 mRNA 0.55 9 CM030125.1 22276342 ~ 22292501 (+)