RNA id: TU227262


Basic Information

Item Value
RNA id TU227262
length 237
lncRNA type read_through
GC content 0.35
exon number 2
gene id G200262
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 156207 ~ 257270 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAAAAAACAAAATAACGACTTTTCAACAATATATAGTCATGGGCCGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCTTTATGAATCTTTTGTTTCAAATTAGTGATTCGGATCTCCTATCAAATGGCTAAACTGCTGAAATCATGTGATTTTGGTGCTCCGATTCACTGATTCGATTCGTAAAGCTCCGAAGCAGTGTTTTGAAATCGCCCATATAGATATTGTTAAAAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227206 lncRNA downstream 35060 78005 ~ 121147 (-) True G200216
TU227238 lncRNA downstream 84099 71907 ~ 72108 (-) True G200247
TU227294 lncRNA upstream 2696 259966 ~ 260170 (-) True G200293
TU227299 lncRNA upstream 9910 267180 ~ 267426 (-) True G200298
TU227312 lncRNA upstream 29688 286958 ~ 287477 (-) True G200309
TU227313 lncRNA upstream 30436 287706 ~ 288141 (-) True G200310
TU227314 lncRNA upstream 31616 288886 ~ 289110 (-) True G200311
CI01000047_00124354_00130228.mRNA mRNA downstream 25821 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 49179 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00099711_00100984.mRNA mRNA downstream 55223 99652 ~ 100984 (-) True CI01000047_00099711_00100984
CI01000047_00082013_00099032.mRNA mRNA downstream 57001 81600 ~ 99206 (-) True CI01000047_00082013_00099032
CI01000047_00010948_00034205.mRNA mRNA downstream 121711 10633 ~ 34496 (-) True CI01000047_00010948_00034205
CI01000047_00347663_00378777.mRNA mRNA upstream 89463 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 211138 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 262019 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00532901_00545479.mRNA mRNA upstream 274284 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 288686 545956 ~ 551551 (-) True CI01000047_00546330_00551551
TU227300 other upstream 10260 267530 ~ 268035 (-) True G200299
TU227419 other upstream 261838 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 576671 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1448798 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2875043 3132313 ~ 3133652 (-) False G202733

Expression Profile