RNA id: TU227299


Basic Information

Item Value
RNA id TU227299
length 247
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G200298
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 267180 ~ 267426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTACAGTACATTTCAAATGTAAAAGCTTATCATATATACAAAGTTTTCCAGTGGCCTTCACATTCTTTATCTATTTTCTTGACATTTTAGCTCCAGACATCCATAATTCCAATATTAAAAACTGTATTTTCTTAAGAAATGATTGGTGCTTGTGCTTTTAAAACTCACCACCACAATGCTGAGGTACTGGGGTTAGTTTCTACAGTATTACTATGCAGTTACTAGGGCGTTCAGGGTGGTTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227294 lncRNA downstream 7010 259966 ~ 260170 (-) True G200293
TU227262 lncRNA downstream 9910 156207 ~ 257270 (-) True G200262
TU227279 lncRNA downstream 55812 211101 ~ 211368 (-) True G200279
TU227206 lncRNA downstream 146033 78005 ~ 121147 (-) True G200216
TU227238 lncRNA downstream 195072 71907 ~ 72108 (-) True G200247
TU227312 lncRNA upstream 19532 286958 ~ 287477 (-) True G200309
TU227313 lncRNA upstream 20280 287706 ~ 288141 (-) True G200310
TU227314 lncRNA upstream 21460 288886 ~ 289110 (-) True G200311
TU227310 lncRNA upstream 37788 305214 ~ 306784 (-) True G200307
TU227308 lncRNA upstream 39808 307234 ~ 309179 (-) True G200305
CI01000047_00235688_00240415.mRNA mRNA downstream 26411 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00209567_00227765.mRNA mRNA downstream 39415 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00160239_00163260.mRNA mRNA downstream 103900 158824 ~ 163280 (-) True CI01000047_00160239_00163260
CI01000047_00124354_00130228.mRNA mRNA downstream 136794 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 160152 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00347663_00378777.mRNA mRNA upstream 79307 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 200982 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 251863 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00532901_00545479.mRNA mRNA upstream 264128 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 278530 545956 ~ 551551 (-) True CI01000047_00546330_00551551
TU227300 other upstream 104 267530 ~ 268035 (-) True G200299
TU227419 other upstream 251682 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 566515 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1438642 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2864887 3132313 ~ 3133652 (-) False G202733

Expression Profile