RNA id: TU227313


Basic Information

Item Value
RNA id TU227313
length 436
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G200310
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 287706 ~ 288141 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGAAGTTATGTCTGTACACTTTTGCCCGATTGCTCCTCTCCCGGGAGTCCTAGCCTGGGAATGCCAGAACAGGGTTCGTCTACTACTCATAGCCCGTTTTGGCTGACCCGAGTTTGGTTTTCAGACCTGATATCTCTCCTGGATAGCCCTCCTTGGGAGATTCCCATTCAGAGGGATTTTCTGTTTCAGACAGGGAGCACAGTCCAACTCTGAGGGGGACCAACTGTTAGGCGGTGGTCTCTGAACTGAGGTTGTTGAGACCATCCTAAGTGCTAGGGCTCCATCCACGAGGAAAATGTACACCCTCAAGTGGAGGCTCTTTTCCTTGTGATGCAGAGAGTGCCACTTGGACCCACTTAACTGCCATCTTGGTTTAGTGCTGGAGTTCTTGCAAGATTGCATTTCTGCTGGGTTAACCCCATCTACAATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227312 lncRNA downstream 229 286958 ~ 287477 (-) True G200309
TU227299 lncRNA downstream 20280 267180 ~ 267426 (-) True G200298
TU227294 lncRNA downstream 27536 259966 ~ 260170 (-) True G200293
TU227262 lncRNA downstream 30436 156207 ~ 257270 (-) True G200262
TU227279 lncRNA downstream 76338 211101 ~ 211368 (-) True G200279
TU227314 lncRNA upstream 745 288886 ~ 289110 (-) True G200311
TU227310 lncRNA upstream 17073 305214 ~ 306784 (-) True G200307
TU227308 lncRNA upstream 19093 307234 ~ 309179 (-) True G200305
TU227319 lncRNA upstream 25039 313180 ~ 313432 (-) True G200316
TU227328 lncRNA upstream 41265 329406 ~ 329618 (-) True G200325
CI01000047_00235688_00240415.mRNA mRNA downstream 46937 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00209567_00227765.mRNA mRNA downstream 59941 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00160239_00163260.mRNA mRNA downstream 124426 158824 ~ 163280 (-) True CI01000047_00160239_00163260
CI01000047_00124354_00130228.mRNA mRNA downstream 157320 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 180678 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00347663_00378777.mRNA mRNA upstream 58592 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 180267 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 231148 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00532901_00545479.mRNA mRNA upstream 243413 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 257815 545956 ~ 551551 (-) True CI01000047_00546330_00551551
TU227300 other downstream 19671 267530 ~ 268035 (-) True G200299
TU227419 other upstream 230967 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 545800 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1417927 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2844172 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2844172 3132313 ~ 3133652 (-) True G202733

Expression Profile