RNA id: TU227308


Basic Information

Item Value
RNA id TU227308
length 664
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G200305
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 307234 ~ 309179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTGCTGTCTGTCTTGTTTATTTGGATAAGAGGAAGATAACTTCAGACAATATTGATACATGATTGATGAAGCATTTCCCTTGAGGTGTCAATATGTGTATCTGTAAAAAATATCATTTCTGGATAAAGATAGACATTCAGATTTTATAGCTTATGTGTATGTGCACACTTTCTGTTTCTTTAAGGATTTTAAATGGTGATTCACATTCACAGAAGAGTTCTTGTATCTGATGTCATGTTGAATAGAAGTGCAGCGTTTAACAAACCCAGCTGATTCGCTAGACTTTGCTCAGAAATCAGGCCTGTCCTTCTTCAGTTTAGAGTAGTCCATGTTGACAGAGAAGAGCTTGTACTGGTCATTTGGACCCAGTTTATTCCAAGGCTCTGGGTTGTTCTTGCGATCCCATGAGCAGTCAGGGTTCTTTAGAGCGATGCGGCCCAGGTAAAGCATAGACATGGTCGCTCCACCACAGCCGGGTGGCTTTTCAGTTGTTTCAGTACGGTATTCAGCATGTCAAACCCCCAAAATATTTCTATACAACAGGATTTGATGAGCGTTCGTACACTGAACTGTAGGCTATGTTTCCTGAGCGGAGTGTGAAGGGATGCCTGATACAAATGAGCTGAAGGCTTGTCCAGCTGCTCCGTTCTGGCGATAGAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227310 lncRNA downstream 450 305214 ~ 306784 (-) True G200307
TU227314 lncRNA downstream 18124 288886 ~ 289110 (-) True G200311
TU227313 lncRNA downstream 19093 287706 ~ 288141 (-) True G200310
TU227312 lncRNA downstream 19757 286958 ~ 287477 (-) True G200309
TU227299 lncRNA downstream 39808 267180 ~ 267426 (-) True G200298
TU227319 lncRNA upstream 4001 313180 ~ 313432 (-) True G200316
TU227328 lncRNA upstream 20227 329406 ~ 329618 (-) True G200325
TU227332 lncRNA upstream 28748 337927 ~ 338267 (-) True G200329
TU227335 lncRNA upstream 31975 341154 ~ 341480 (-) False G200332
TU227336 lncRNA upstream 31975 341154 ~ 341480 (-) False G200332
CI01000047_00235688_00240415.mRNA mRNA downstream 66465 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00209567_00227765.mRNA mRNA downstream 79469 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00160239_00163260.mRNA mRNA downstream 143954 158824 ~ 163280 (-) True CI01000047_00160239_00163260
CI01000047_00124354_00130228.mRNA mRNA downstream 176848 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 200206 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00347663_00378777.mRNA mRNA upstream 37554 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 159229 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 210110 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00532901_00545479.mRNA mRNA upstream 222375 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 236777 545956 ~ 551551 (-) True CI01000047_00546330_00551551
TU227300 other downstream 39199 267530 ~ 268035 (-) True G200299
TU227419 other upstream 209929 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 524762 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1396889 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2823134 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2823134 3132313 ~ 3133652 (-) True G202733

Expression Profile