RNA id: TU227335


Basic Information

Item Value
RNA id TU227335
length 285
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G200332
representative False

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 341154 ~ 341480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATTGGGCCAAAAGTGTCAATATTTTGTGTGGCCACCATTATTTTCCAGCACTGCCTTAACCCTCTTGGGCATGGAGTTCACCAGAGCTTCACAGGTTGCCACTGGAGTCCTCTTCCACTCCTCCATGATGACATCACGGAGCTGGTGGATGTTAGAGACCTTGCGCTCCTCCACCTTCCGTTTGAGGATGCCCCACAGATGCTCAATTACCCTCAGCTTCTTTAGCAAGGCAGTGGTCGTCTTGGAGGTGTGTTTGAGGTCTTTATCATGTTGGAATACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227332 lncRNA downstream 2887 337927 ~ 338267 (-) True G200329
TU227328 lncRNA downstream 11536 329406 ~ 329618 (-) True G200325
TU227319 lncRNA downstream 27722 313180 ~ 313432 (-) True G200316
TU227308 lncRNA downstream 31975 307234 ~ 309179 (-) True G200305
TU227310 lncRNA downstream 34370 305214 ~ 306784 (-) True G200307
TU227387 lncRNA upstream 117440 458920 ~ 459172 (-) True G200372
TU227393 lncRNA upstream 119950 461430 ~ 463091 (-) True G200376
TU227407 lncRNA upstream 123270 464750 ~ 465083 (-) True G200387
TU227425 lncRNA upstream 189124 530604 ~ 531001 (-) False G200404
TU227427 lncRNA upstream 189124 530604 ~ 531055 (-) False G200404
CI01000047_00235688_00240415.mRNA mRNA downstream 100385 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00209567_00227765.mRNA mRNA downstream 113389 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00160239_00163260.mRNA mRNA downstream 177874 158824 ~ 163280 (-) True CI01000047_00160239_00163260
CI01000047_00124354_00130228.mRNA mRNA downstream 210768 124003 ~ 130386 (-) True CI01000047_00124354_00130228
CI01000047_00103238_00106878.mRNA mRNA downstream 234126 102352 ~ 107028 (-) True CI01000047_00103238_00106878
CI01000047_00347663_00378777.mRNA mRNA upstream 5253 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00468782_00483200.mRNA mRNA upstream 126928 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00519408_00522108.mRNA mRNA upstream 177809 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00532901_00545479.mRNA mRNA upstream 190074 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 204476 545956 ~ 551551 (-) True CI01000047_00546330_00551551
TU227300 other downstream 73119 267530 ~ 268035 (-) True G200299
TU227419 other upstream 177628 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227498 other upstream 492461 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1364588 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2790833 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2790833 3132313 ~ 3133652 (-) True G202733

Expression Profile