RNA id: TU227424


Basic Information

Item Value
RNA id TU227424
length 264
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G200404
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 530604 ~ 531055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTACAGATGGCACGGCGGATTGTGTTTACCGACAGTGGTTTCTGGAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTCGTCTGAGGGCCCGAAGACCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227407 lncRNA downstream 65709 464750 ~ 465083 (-) True G200387
TU227393 lncRNA downstream 67701 461430 ~ 463091 (-) True G200376
TU227387 lncRNA downstream 71620 458920 ~ 459172 (-) True G200372
TU227336 lncRNA downstream 189312 341154 ~ 341480 (-) False G200332
TU227466 lncRNA upstream 239448 770503 ~ 770964 (-) True G200440
TU227483 lncRNA upstream 248393 779448 ~ 801732 (-) True G200457
TU227485 lncRNA upstream 249415 780470 ~ 782343 (-) True G200459
TU227488 lncRNA upstream 256319 787374 ~ 787712 (-) True G200462
TU227494 lncRNA upstream 284272 815327 ~ 816315 (-) True G200468
CI01000047_00519408_00522108.mRNA mRNA downstream 8547 519289 ~ 522245 (-) False CI01000047_00519408_00522108
CI01000047_00468782_00483200.mRNA mRNA downstream 47592 468408 ~ 483200 (-) True CI01000047_00468782_00483200
CI01000047_00347663_00378777.mRNA mRNA downstream 152015 346733 ~ 378777 (-) True CI01000047_00347663_00378777
CI01000047_00235688_00240415.mRNA mRNA downstream 290023 235516 ~ 240769 (-) True CI01000047_00235688_00240415
CI01000047_00209567_00227765.mRNA mRNA downstream 303027 209497 ~ 227765 (-) True CI01000047_00209567_00227765
CI01000047_00532901_00545479.mRNA mRNA upstream 499 531554 ~ 545479 (-) True CI01000047_00532901_00545479
CI01000047_00546330_00551551.mRNA mRNA upstream 14901 545956 ~ 551551 (-) True CI01000047_00546330_00551551
CI01000047_00558772_00579870.mRNA mRNA upstream 26997 558052 ~ 580705 (-) True CI01000047_00558772_00579870
CI01000047_00590846_00598816.mRNA mRNA upstream 59590 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00611745_00618340.mRNA mRNA upstream 79687 610742 ~ 618340 (-) True CI01000047_00611745_00618340
TU227419 other downstream 8550 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 262757 267530 ~ 268035 (-) True G200299
TU227498 other upstream 302886 833941 ~ 834471 (-) True G200472
TU227734 other upstream 1175013 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2601258 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2601258 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 3266748 3985342 ~ 3986402 (-) True G202944

Expression Profile