RNA id: TU227485


Basic Information

Item Value
RNA id TU227485
length 1846
lncRNA type intronic
GC content 0.38
exon number 2
gene id G200459
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 780470 ~ 782343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTTTTACTTTATTTTTTTTTATTGTGGGCCCAGTCAAGATTTTTCCAGGGCAAGTAAAAATTTGAACCACTGGCCCAACCGGGCCAGCAGAAAAAATCCTTAGCGTTGAGCCCTGCTTTTACATTCACAAAAGGCTACAGTACACACTACATGAAAGGTAGTATCTGAAAAAGCACAATGGGGCACTTTAAAATAGAAGATAAATTAAGCAGAACAAAGTGTGGTGACATGGTGTTGGGCTAACAAAGTTCTGCTATTCTTTTGCTTCCTTGTTTTATTGAGGTGACTGCCTTAACTGAAAATGTAAAGTAACTCATTACAAAACATTATGGGCCAGATTTACTAACAGCTTGCACCAGCGCAAACCCTCTTTTGGCGTTAGAAACTTCTGTCAGGATTTACTAAAGACATGCAGTGAAAAATCAGCACTGAAAAGGCGGCTGTCTGTTATTGCATATGCATTTGTAGGAGTTTACCTTTCAGATGCAAAATTTATGGGAGGAGAATGTTTAAATGAATCATGCAAGGTAATTTACTAAGGTTTGCGCTAGTCAATTTACTGGTATTTGCGCCATTATTTACCACCCAAAAAAAGCATGTCTTAAACCAAACGCTAATTTGTGCTGCTCTTGGTAAATTGCGTTGGTCATTATGGAAATGATCCGGCTGCGTCTGTGTCCTTTAATTTGTGTGTCGTCAGTAGATCATGCGCAGAACTTTCCACTCTCATCTGAGCTTTTTTGGATTTGCTCTCTCAAGCTAATTTGTGCCGTTTAGTAAATCCGGCCCCCAAGAATCATGATAAGAATAATAAACTCAAGAAGGTTCCAAAATTTACTCTGAAGCTCTGTTCAAAGATCCATTCAGACAGGATAAATGGTTTGTCCCTCTACGACTCACATGTGAGTATCAGCAGAAGCAGGTGCTTCCTCTGTTCACAGGAGTGTTTGTGTCAGAGGCAGAACTTGCTTTGAAACTACTTTATGAGACATACTGGAAATGTAGCATCTGAACAGTGTCAGTAATTAGCATGGGGTCATATGAAGCAAACTGCATTAAGTGATCTCAACCAAAACTAGACAAAAATAAAGATATTCATAATAACAAATTAGCAAAGTCTTGGATAGCTCAACGCTAGTAAATCCGCCAGCTGGCTCTCTCTATCGGATGCCAAGAAGAAGGTTCGGATGAAATCCAGGTTGCCATTGGCAACACGGCCTCAACGTCTAGACTGAATGGCAACCTTTAAAATGGCACTACACAATGTTGCAAGTTCTGAGTGATTTTTACCACAATATGATACAATTGCTAGGGTGTTCTGAGTGGTTGAGAAACCAGATTTGAAATGTTCACAAAATATTTTCAAAAATCTATTTTCTAACTGAATAGAGGAAATGATGAGTGAGCACCAGATCTTTTCAATGGTCCACAACAGCCAAATATAAACTAAACAGCCCCAGTGTTAATTTCTTGTTTTTGTCATTGTTTCTTGTTTGACGAAAATAGCCTTTAAATTAAGTTGTCGTATGCACACACACACACACACAAAAAGTACTTTAGTTTACCAGTGTTCATTCACTGTTTGGCTACAGCTCATGCTTATCAAACTGGTCAATAGAGTGCATTAGAGCCCGTCCACTAAGAACTTTTTCCATTGGGATTTTTTTTTTTTTTTTAAAAAGTCTTTGTTACAGCGTTATAAGCCAGGAACCAAACCAACAAGCAACGAGGTGACTTTTAAACATTGCTTCCAATTAGTTTGTAATAAGAATTTTAAAAAGAGAAAAGAGAAGGATTTAATGGCTTTAAAGGGTTATTAGTTCAGTGTTTCCCAACCTTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227466 lncRNA downstream 9506 770503 ~ 770964 (-) True G200440
TU227427 lncRNA downstream 249415 530604 ~ 531055 (-) False G200404
TU227424 lncRNA downstream 249415 530792 ~ 531055 (-) True G200404
TU227425 lncRNA downstream 249469 530604 ~ 531001 (-) False G200404
TU227407 lncRNA downstream 315387 464750 ~ 465083 (-) True G200387
TU227488 lncRNA upstream 5031 787374 ~ 787712 (-) True G200462
TU227494 lncRNA upstream 32984 815327 ~ 816315 (-) True G200468
TU227495 lncRNA upstream 34266 816609 ~ 817078 (-) True G200469
TU227496 lncRNA upstream 50843 833186 ~ 833457 (-) True G200470
TU227497 lncRNA upstream 51167 833510 ~ 833867 (-) True G200471
CI01000047_00701972_00715090.mRNA mRNA downstream 65380 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 91378 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 135187 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 162130 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 181654 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00884469_00889027.mRNA mRNA upstream 101355 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 108290 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 287959 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 336809 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 392245 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
TU227419 other downstream 258228 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 512435 267530 ~ 268035 (-) True G200299
TU227498 other upstream 51598 833941 ~ 834471 (-) True G200472
TU227734 other upstream 923725 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2349970 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2349970 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 3015460 3985342 ~ 3986402 (-) True G202944

Expression Profile