RNA id: TU227488


Basic Information

Item Value
RNA id TU227488
length 282
lncRNA type intronic
GC content 0.28
exon number 2
gene id G200462
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 787374 ~ 787712 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAACGAAATAACTGACATGGGAAAATTACGTCAGTTAGAGGTCCTGAATTTCAGTTTCGATTACATTTCAATTAATCGTCCAGCCCTAGTTAAAAGGCATGTTCTTTTTAAAAAAATGTTTTTCACTAAATGAACACAAGGAATAACATTTTTTTTAAGATTATTAGTCTTATTCAGCAAGGATACATTAAATTAATCAAAAGTGACAGTAACACGTTTATAATGTTACGAAAGATTTCTATCTCGAATAAATGCTGTTCTTTTGAACTTTCTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227485 lncRNA downstream 5031 780470 ~ 782343 (-) True G200459
TU227466 lncRNA downstream 16410 770503 ~ 770964 (-) True G200440
TU227427 lncRNA downstream 256319 530604 ~ 531055 (-) False G200404
TU227424 lncRNA downstream 256319 530792 ~ 531055 (-) True G200404
TU227425 lncRNA downstream 256373 530604 ~ 531001 (-) False G200404
TU227494 lncRNA upstream 27615 815327 ~ 816315 (-) True G200468
TU227495 lncRNA upstream 28897 816609 ~ 817078 (-) True G200469
TU227496 lncRNA upstream 45474 833186 ~ 833457 (-) True G200470
TU227497 lncRNA upstream 45798 833510 ~ 833867 (-) True G200471
TU227505 lncRNA upstream 60131 847843 ~ 848067 (-) True G200479
CI01000047_00701972_00715090.mRNA mRNA downstream 72284 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 98282 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 142091 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 169034 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 188558 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00884469_00889027.mRNA mRNA upstream 95986 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 102921 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 282590 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 331440 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 386876 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
TU227419 other downstream 265132 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 519339 267530 ~ 268035 (-) True G200299
TU227498 other upstream 46229 833941 ~ 834471 (-) True G200472
TU227734 other upstream 918356 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2344601 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2344601 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 3010091 3985342 ~ 3986402 (-) True G202944

Expression Profile