RNA id: TU227494


Basic Information

Item Value
RNA id TU227494
length 989
lncRNA type intronic
GC content 0.36
exon number 1
gene id G200468
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 815327 ~ 816315 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGTACCCACTGTATATATATATTATATATATATATATACACACTGACTGCTCTTTTCCATATAATAAAAGTGAATGGGAAATGGGTCTGTTAAGAACTAAAAAGACAAAAAAGAACATAAAAGTGGTCCATATGATTCGTACTCAAGTCTTATGTCACAATATAGCTTTGCATGACAAACTGGCTCAAATTCAACCCGTTAAACTTGATACGTTTATGTTGTGTTTGTGTCATTTTAGAACTTGGTGGCTCTAGTCACCATTCACTTTCATTGAATTTCGGCCTGGATATTCTTCAAAAATTCACCTTTCGTGTTCCACTGTGGACAGACAATCATCTGGGTTTGGAACATTATGGTGAGACAGTAAAGGTGAACTATTTATGAGTGAATGCATGAAAGTATGCATAGCGATAAGTGTATGTTGATTCATTTCCAAATATATACCCATAATTCATAAAGTCCTTAAACAACATACAATCATTGGATGTAATGGCACAACATGGAGATGACAAAGGCCTTCCAACTCTTGAAAATCCACCATCTGATGGATTTCAATTCAGAAACACATACAAACACACAGTAACAAGTCTCATATCTGCAGCAGTCGTTCATGCAAGCTGACACGGCTCATAATGAGCAGGGTTATAAAGAGGAAAGAGGTGAAAGACCAGTCAAACCCGGCAATAACAGACAACACTCAAACACACATGAAACTCATGCAACAGCTGCTCCACCAGTACATGCTGACGACTAGCAAAGAAATGAATGAACAATTCCATTCGGTTATTGTACCCAAAGCAAAAAATGCAAACAAAGCTCTCTGGAAAAAAAAACAAGCCTGTCATTATCATGTTATCACGTGTTAATATCCATTAGACACATCACAGATCACTATAAACAAGATTTGTGTGTAAATTTCATGTGTAAGCAACACAAAACACTTAAAGGGTTAGTTCACCCAAAAAATAAAATTCTGTCATCATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227483 lncRNA downstream 13595 779448 ~ 801732 (-) True G200457
TU227488 lncRNA downstream 27615 787374 ~ 787712 (-) True G200462
TU227485 lncRNA downstream 32984 780470 ~ 782343 (-) True G200459
TU227466 lncRNA downstream 44363 770503 ~ 770964 (-) True G200440
TU227427 lncRNA downstream 284272 530604 ~ 531055 (-) False G200404
TU227495 lncRNA upstream 294 816609 ~ 817078 (-) True G200469
TU227496 lncRNA upstream 16871 833186 ~ 833457 (-) True G200470
TU227497 lncRNA upstream 17195 833510 ~ 833867 (-) True G200471
TU227505 lncRNA upstream 31528 847843 ~ 848067 (-) True G200479
TU227639 lncRNA upstream 275569 1091884 ~ 1092263 (-) True G200607
CI01000047_00701972_00715090.mRNA mRNA downstream 100237 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 126235 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 170044 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 196987 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 216511 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00884469_00889027.mRNA mRNA upstream 67383 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 74318 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 253987 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 302837 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 358273 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
TU227419 other downstream 293085 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 547292 267530 ~ 268035 (-) True G200299
TU227498 other upstream 17626 833941 ~ 834471 (-) True G200472
TU227734 other upstream 889753 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2315998 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2315998 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2981488 3985342 ~ 3986402 (-) True G202944

Expression Profile