RNA id: TU227497


Basic Information

Item Value
RNA id TU227497
length 358
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G200471
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 833510 ~ 833867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCATCTGTTCAAACATAAATATTACCTCAAATGCATTCTTCTAAAATAACACAGATCAGGCATAACATTATGACCACCTTCCTAATATTGTGTTGGTCCCCCTTTTGCTGCCAAAACAGCCCTGACCCGTCGAGGCATGGACTCCACTAGACCCCTGAAGGTGTGCTGTGGTATCTGACACCAAGATGTTAGCAGCAGATCCTTTAAGTCCTGTAAGTTGTGAGGTGGGACCTTCATGGATCGCACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTCAGATCTGAGGAAATTGGAGGCCAAGTCAACACCTCAAACTCGTTGTTGTGCTCCTCAAACCATTCCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227496 lncRNA downstream 53 833186 ~ 833457 (-) True G200470
TU227495 lncRNA downstream 16432 816609 ~ 817078 (-) True G200469
TU227494 lncRNA downstream 17195 815327 ~ 816315 (-) True G200468
TU227483 lncRNA downstream 31778 779448 ~ 801732 (-) True G200457
TU227505 lncRNA upstream 13976 847843 ~ 848067 (-) True G200479
TU227639 lncRNA upstream 258017 1091884 ~ 1092263 (-) True G200607
TU227641 lncRNA upstream 263794 1097661 ~ 1097894 (-) True G200609
TU227658 lncRNA upstream 300278 1134145 ~ 1142557 (-) True G200626
TU227685 lncRNA upstream 489630 1323497 ~ 1323757 (-) True G200652
CI01000047_00701972_00715090.mRNA mRNA downstream 118420 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 144418 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 188227 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 215170 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 234694 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00884469_00889027.mRNA mRNA upstream 49831 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 56766 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 236435 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 285285 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 340721 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
TU227419 other downstream 311268 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 565475 267530 ~ 268035 (-) True G200299
TU227498 other upstream 74 833941 ~ 834471 (-) True G200472
TU227734 other upstream 872201 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2298446 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2298446 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2963936 3985342 ~ 3986402 (-) True G202944

Expression Profile