RNA id: TU227505


Basic Information

Item Value
RNA id TU227505
length 225
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G200479
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 847843 ~ 848067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTGCCATACAAACGAAAAACATAGTTGTAAACTAGTTGTGTACTCAAAGTTTACTACTGTTACACTTAAAGTATACTTAAAAGTATACTTCTATACACTAAAAAGTGGGCCAATTTAGTCCCAAGTAGTGTTGAAATAGTACACTTACAAGTCTACTACTAGAACATTGATATTAGTATACTTCCTACATAAAGTATACTTAAAAATATACTTGGGCTGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227497 lncRNA downstream 13976 833510 ~ 833867 (-) True G200471
TU227496 lncRNA downstream 14386 833186 ~ 833457 (-) True G200470
TU227495 lncRNA downstream 30765 816609 ~ 817078 (-) True G200469
TU227494 lncRNA downstream 31528 815327 ~ 816315 (-) True G200468
TU227488 lncRNA downstream 60131 787374 ~ 787712 (-) True G200462
TU227639 lncRNA upstream 243817 1091884 ~ 1092263 (-) True G200607
TU227641 lncRNA upstream 249594 1097661 ~ 1097894 (-) True G200609
TU227658 lncRNA upstream 286078 1134145 ~ 1142557 (-) True G200626
TU227685 lncRNA upstream 475430 1323497 ~ 1323757 (-) True G200652
TU227690 lncRNA upstream 479327 1327394 ~ 1327615 (-) True G200657
CI01000047_00701972_00715090.mRNA mRNA downstream 132753 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_00654212_00689092.mRNA mRNA downstream 158751 653448 ~ 689092 (-) True CI01000047_00654212_00689092
CI01000047_00620874_00645283.mRNA mRNA downstream 202560 620756 ~ 645283 (-) True CI01000047_00620874_00645283
CI01000047_00611745_00618340.mRNA mRNA downstream 229503 610742 ~ 618340 (-) True CI01000047_00611745_00618340
CI01000047_00590846_00598816.mRNA mRNA downstream 249027 590645 ~ 598816 (-) True CI01000047_00590846_00598816
CI01000047_00884469_00889027.mRNA mRNA upstream 35631 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00892063_00896561.mRNA mRNA upstream 42566 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_01071329_01073839.mRNA mRNA upstream 222235 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_01119401_01120162.mRNA mRNA upstream 271085 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01175229_01292056.mRNA mRNA upstream 326521 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
TU227498 other downstream 13372 833941 ~ 834471 (-) True G200472
TU227419 other downstream 325601 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 579808 267530 ~ 268035 (-) True G200299
TU227734 other upstream 858001 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 2284246 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 2284246 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2949736 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 3365342 4214294 ~ 4214430 (-) True G203128

Expression Profile