RNA id: TU227658


Basic Information

Item Value
RNA id TU227658
length 650
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G200626
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1134145 ~ 1142557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGAGTTGTATTTGTTAACATTAGTTAATGCACTGTGAAGTAACATGAACAAACTATGAACGGCTGTATTTTTATTAACTAACTTTAACAAAGATTAACAAATACAGTAACAAATGTATCACTCATGGTTAGTTCATAAATGAACCTTATTGTAAAGTGTTACCACAAATTAGATAAGATGCTTGAACACACATGTAAGATTCAGACAGATGAAACAGAATATATTTTTGTAAGTTGGATTCATAAAGACTTGTTTCTGAAAGAATGATTCAGTGATAGACACATTTTGAACAGTAATTTGTTGCCACCTAGTGGCGTAATAATGCAATCGATACAGTCGTTATTTGAAGTACAGTTACTTTCAGAAGGTAGCCTAATTTATTATACATAAACACCAGCGTTTCTATCTGAATAATAAACTTTTGTATACTTCTGTTATAATTGGAATAGGCCTATTTGTCACACAGAAATAATGTGCGTTTGAAAATATTGTTTGTGAAGCTGTTTATATCTACACATGACAACTCTCTTTAGATCAACGGCAGCGCGAACGCAGATTTGAATGTCGCGATTTTATTTTTGTCAAAGGTTTAATATACACGGGAGAATCGTTGTCATTTAGGAATTAGATCATGTGGGTGATGAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227641 lncRNA downstream 36251 1097661 ~ 1097894 (-) True G200609
TU227639 lncRNA downstream 41882 1091884 ~ 1092263 (-) True G200607
TU227505 lncRNA downstream 286078 847843 ~ 848067 (-) True G200479
TU227497 lncRNA downstream 300278 833510 ~ 833867 (-) True G200471
TU227496 lncRNA downstream 300688 833186 ~ 833457 (-) True G200470
TU227685 lncRNA upstream 180940 1323497 ~ 1323757 (-) True G200652
TU227690 lncRNA upstream 184837 1327394 ~ 1327615 (-) True G200657
TU227714 lncRNA upstream 216833 1359390 ~ 1359612 (-) True G200678
TU227717 lncRNA upstream 224183 1366740 ~ 1367087 (-) True G200681
TU227718 lncRNA upstream 224567 1367124 ~ 1367339 (-) True G200682
CI01000047_01119401_01120162.mRNA mRNA downstream 13912 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01071329_01073839.mRNA mRNA downstream 60306 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_00892063_00896561.mRNA mRNA downstream 237584 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_00884469_00889027.mRNA mRNA downstream 245118 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_00701972_00715090.mRNA mRNA downstream 419055 701972 ~ 715090 (-) True CI01000047_00701972_00715090
CI01000047_01175229_01292056.mRNA mRNA upstream 32031 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
CI01000047_01337067_01353593.mRNA mRNA upstream 194412 1336969 ~ 1353593 (-) True CI01000047_01337067_01353593
CI01000047_01373782_01374697.mRNA mRNA upstream 231225 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
CI01000047_01375108_01392690.mRNA mRNA upstream 232356 1374913 ~ 1392690 (-) True CI01000047_01375108_01392690
CI01000047_01404421_01451987.mRNA mRNA upstream 261814 1404371 ~ 1452053 (-) True CI01000047_01404421_01451987
TU227498 other downstream 299674 833941 ~ 834471 (-) True G200472
TU227419 other downstream 611903 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 866110 267530 ~ 268035 (-) True G200299
TU227734 other upstream 563511 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 1989756 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1989756 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2655246 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 3070852 4214294 ~ 4214430 (-) True G203128

Expression Profile