RNA id: TU227685


Basic Information

Item Value
RNA id TU227685
length 261
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G200652
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1323497 ~ 1323757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAAATCAGCTTCTGAAAGAAACTTGGCGCTGAAAACGCCGCATTTATCGATTACATTGTTTCACCACCAGGTGGCGACAAGTGAGTGTTAAAATTTTTTTTTACGTTGAATCTTCTTTCAGCAGATTCTTTCAAATACACTGATTCATCCAGTAATGAAACGAGTATTTATGAGTGAGTCATTGAATCATACATCCAAACAGATTTTTAAAAAATAAAATTTTAAAATAGACTGCAGCAATTGATATTTTGTCAGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227658 lncRNA downstream 180940 1134145 ~ 1142557 (-) True G200626
TU227641 lncRNA downstream 225603 1097661 ~ 1097894 (-) True G200609
TU227639 lncRNA downstream 231234 1091884 ~ 1092263 (-) True G200607
TU227505 lncRNA downstream 475430 847843 ~ 848067 (-) True G200479
TU227497 lncRNA downstream 489630 833510 ~ 833867 (-) True G200471
TU227690 lncRNA upstream 3637 1327394 ~ 1327615 (-) True G200657
TU227714 lncRNA upstream 35633 1359390 ~ 1359612 (-) True G200678
TU227717 lncRNA upstream 42983 1366740 ~ 1367087 (-) True G200681
TU227718 lncRNA upstream 43367 1367124 ~ 1367339 (-) True G200682
TU227801 lncRNA upstream 132426 1456183 ~ 1456534 (-) True G200763
CI01000047_01175229_01292056.mRNA mRNA downstream 31441 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
CI01000047_01119401_01120162.mRNA mRNA downstream 203264 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01071329_01073839.mRNA mRNA downstream 249658 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_00892063_00896561.mRNA mRNA downstream 426936 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_00884469_00889027.mRNA mRNA downstream 434470 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_01337067_01353593.mRNA mRNA upstream 13212 1336969 ~ 1353593 (-) True CI01000047_01337067_01353593
CI01000047_01373782_01374697.mRNA mRNA upstream 50025 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
CI01000047_01375108_01392690.mRNA mRNA upstream 51156 1374913 ~ 1392690 (-) True CI01000047_01375108_01392690
CI01000047_01404421_01451987.mRNA mRNA upstream 80614 1404371 ~ 1452053 (-) True CI01000047_01404421_01451987
CI01000047_01470439_01470729.mRNA mRNA upstream 146642 1470399 ~ 1470794 (-) True CI01000047_01470439_01470729
TU227498 other downstream 489026 833941 ~ 834471 (-) True G200472
TU227419 other downstream 801255 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 1055462 267530 ~ 268035 (-) True G200299
TU227734 other upstream 382311 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 1808556 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1808556 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2474046 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 2889652 4214294 ~ 4214430 (-) True G203128

Expression Profile