RNA id: TU227690


Basic Information

Item Value
RNA id TU227690
length 222
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G200657
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1327394 ~ 1327615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGTCATAAACAGCTCAAGCATAAACCGGTCGGAACAGGTAGTTTTTTTCCTCTTACTCCGATTTCGTGCGGCATGTAAACGCATTAACCTGTTTTCTGTCGGCTTATTGAAGTGCACATGTGTGATGCGTGACAGAAACGCATCCTTAGTGCAGATTTAAACGCATCCAGACAGAGCAAGCATTTTGCGGGAAAAGAAGAAGGAAATATCACAAACGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227685 lncRNA downstream 3637 1323497 ~ 1323757 (-) True G200652
TU227658 lncRNA downstream 184837 1134145 ~ 1142557 (-) True G200626
TU227641 lncRNA downstream 229500 1097661 ~ 1097894 (-) True G200609
TU227639 lncRNA downstream 235131 1091884 ~ 1092263 (-) True G200607
TU227505 lncRNA downstream 479327 847843 ~ 848067 (-) True G200479
TU227714 lncRNA upstream 31775 1359390 ~ 1359612 (-) True G200678
TU227717 lncRNA upstream 39125 1366740 ~ 1367087 (-) True G200681
TU227718 lncRNA upstream 39509 1367124 ~ 1367339 (-) True G200682
TU227801 lncRNA upstream 128568 1456183 ~ 1456534 (-) True G200763
TU227757 lncRNA upstream 224389 1552004 ~ 1553333 (-) True G200720
CI01000047_01175229_01292056.mRNA mRNA downstream 35338 1174588 ~ 1292056 (-) True CI01000047_01175229_01292056
CI01000047_01119401_01120162.mRNA mRNA downstream 207161 1119152 ~ 1120233 (-) True CI01000047_01119401_01120162
CI01000047_01071329_01073839.mRNA mRNA downstream 253555 1070302 ~ 1073839 (-) True CI01000047_01071329_01073839
CI01000047_00892063_00896561.mRNA mRNA downstream 430833 890633 ~ 896561 (-) True CI01000047_00892063_00896561
CI01000047_00884469_00889027.mRNA mRNA downstream 438367 883698 ~ 889027 (-) True CI01000047_00884469_00889027
CI01000047_01337067_01353593.mRNA mRNA upstream 9354 1336969 ~ 1353593 (-) True CI01000047_01337067_01353593
CI01000047_01373782_01374697.mRNA mRNA upstream 46167 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
CI01000047_01375108_01392690.mRNA mRNA upstream 47298 1374913 ~ 1392690 (-) True CI01000047_01375108_01392690
CI01000047_01404421_01451987.mRNA mRNA upstream 76756 1404371 ~ 1452053 (-) True CI01000047_01404421_01451987
CI01000047_01470439_01470729.mRNA mRNA upstream 142784 1470399 ~ 1470794 (-) True CI01000047_01470439_01470729
TU227498 other downstream 492923 833941 ~ 834471 (-) True G200472
TU227419 other downstream 805152 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 1059359 267530 ~ 268035 (-) True G200299
TU227734 other upstream 378453 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 1804698 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1804698 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2470188 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 2885794 4214294 ~ 4214430 (-) True G203128

Expression Profile