RNA id: TU227757


Basic Information

Item Value
RNA id TU227757
length 277
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G200720
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1552004 ~ 1553333 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAGCCCCCGCTGGGCCCACCTCCACCAGCCTGCTCGCCAGCCCTTCTCCCTCCACCATGGGTGGCAGGGATGCCAGCTTGTGTCTTTTGACCAGACGGCATGTGATACGTGTTGGCGCGGTGCACTTGCGGGGCGGGATGATGATGCGCATGCCATTGTGGCGACTTCCTCGCATGGAACCGCCGCGGGCGTCCACCATGAAGCTCACCAAAAACCTTTATCACGTTCCACCGTCGTGTCTGCACAGATTTCAAAGGGTACTCAACCACGGATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227801 lncRNA downstream 95470 1456183 ~ 1456534 (-) True G200763
TU227718 lncRNA downstream 184665 1367124 ~ 1367339 (-) True G200682
TU227717 lncRNA downstream 184917 1366740 ~ 1367087 (-) True G200681
TU227714 lncRNA downstream 192392 1359390 ~ 1359612 (-) True G200678
TU227690 lncRNA downstream 224389 1327394 ~ 1327615 (-) True G200657
TU227749 lncRNA upstream 52952 1606285 ~ 1606652 (-) True G200712
TU227748 lncRNA upstream 53508 1606841 ~ 1607453 (-) True G200711
TU227874 lncRNA upstream 73288 1626621 ~ 1626846 (-) True G200827
TU227894 lncRNA upstream 141884 1695217 ~ 1695451 (-) True G200847
TU227897 lncRNA upstream 146641 1699974 ~ 1700241 (-) True G200850
CI01000047_01470439_01470729.mRNA mRNA downstream 81210 1470399 ~ 1470794 (-) True CI01000047_01470439_01470729
CI01000047_01404421_01451987.mRNA mRNA downstream 99951 1404371 ~ 1452053 (-) True CI01000047_01404421_01451987
CI01000047_01375108_01392690.mRNA mRNA downstream 159314 1374913 ~ 1392690 (-) True CI01000047_01375108_01392690
CI01000047_01373782_01374697.mRNA mRNA downstream 177150 1373782 ~ 1374854 (-) True CI01000047_01373782_01374697
CI01000047_01337067_01353593.mRNA mRNA downstream 198411 1336969 ~ 1353593 (-) True CI01000047_01337067_01353593
CI01000047_01654684_01688086.mRNA mRNA upstream 100805 1654138 ~ 1688308 (-) True CI01000047_01654684_01688086
CI01000047_01708628_01744282.mRNA mRNA upstream 155187 1708520 ~ 1744282 (-) False CI01000047_01708628_01744282
CI01000047_01813106_01813800.mRNA mRNA upstream 259524 1812857 ~ 1814122 (-) True CI01000047_01813106_01813800
CI01000047_01823330_01823581.mRNA mRNA upstream 269939 1823272 ~ 1823581 (-) True CI01000047_01823330_01823581
CI01000047_01824882_01828103.mRNA mRNA upstream 271549 1824882 ~ 1828952 (-) True CI01000047_01824882_01828103
TU227498 other downstream 717533 833941 ~ 834471 (-) True G200472
TU227419 other downstream 1029762 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 1283969 267530 ~ 268035 (-) True G200299
TU227734 other upstream 152735 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230047 other upstream 1578980 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1578980 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 2244470 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 2660076 4214294 ~ 4214430 (-) True G203128

Expression Profile