RNA id: TU227930


Basic Information

Item Value
RNA id TU227930
length 350
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G200880
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1888757 ~ 1889106 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAACAATGTATATTATTTATAAACTAATATTCAGCTTTTCTTTTAATAGTCAATTTATTTTCAGCAGTCATCAAGCTTGTACACACTGGTCAGTGGTCACAGACACAAAGATGTACCTTTAATTTCACCACACTGATTGCTCACTAAAAAACCCCGAGTCATCATGTTTTCAGGCCATTTCGAGTTTGATTTTGACATGACACAAAGCGGTGATATGTAAGTGACAGTTGTTTACTTACTTTTTAATTAGTCTTCCCATTAACGCCATCACTGTCTTCATTCAGGCCGATTCGACGAGAACGCGCACGAAAACAAGAGGCGGGATTTATCGCACTAACCAATCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227919 lncRNA downstream 27886 1860582 ~ 1860871 (-) True G200869
TU227897 lncRNA downstream 188516 1699974 ~ 1700241 (-) True G200850
TU227894 lncRNA downstream 193306 1695217 ~ 1695451 (-) True G200847
TU227874 lncRNA downstream 261911 1626621 ~ 1626846 (-) True G200827
TU227748 lncRNA downstream 281304 1606841 ~ 1607453 (-) True G200711
TU227939 lncRNA upstream 34554 1923660 ~ 1923995 (-) True G200889
TU227943 lncRNA upstream 41831 1930937 ~ 1934304 (-) False G200890
TU227944 lncRNA upstream 41831 1930937 ~ 1934351 (-) False G200890
TU227940 lncRNA upstream 41917 1931023 ~ 1934304 (-) True G200890
TU227967 lncRNA upstream 115485 2004591 ~ 2004815 (-) True G200912
CI01000047_01824882_01828103.mRNA mRNA downstream 59805 1824882 ~ 1828952 (-) True CI01000047_01824882_01828103
CI01000047_01823330_01823581.mRNA mRNA downstream 65176 1823272 ~ 1823581 (-) True CI01000047_01823330_01823581
CI01000047_01813106_01813800.mRNA mRNA downstream 74635 1812857 ~ 1814122 (-) True CI01000047_01813106_01813800
CI01000047_01708628_01744282.mRNA mRNA downstream 144475 1708520 ~ 1744282 (-) False CI01000047_01708628_01744282
CI01000047_01654684_01688086.mRNA mRNA downstream 200449 1654138 ~ 1688308 (-) True CI01000047_01654684_01688086
CI01000047_02317565_02318902.mRNA mRNA upstream 428093 2317199 ~ 2318963 (-) True CI01000047_02317565_02318902
CI01000047_02325268_02476792.mRNA mRNA upstream 436162 2325268 ~ 2476792 (-) True CI01000047_02325268_02476792
CI01000047_02480919_02482057.mRNA mRNA upstream 591345 2480451 ~ 2483286 (-) True CI01000047_02480919_02482057
CI01000047_02507950_02519956.mRNA mRNA upstream 618502 2507608 ~ 2520199 (-) True CI01000047_02507950_02519956
CI01000047_02524134_02533163.mRNA mRNA upstream 635008 2524114 ~ 2533351 (-) True CI01000047_02524134_02533163
TU227734 other downstream 173240 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 1054286 833941 ~ 834471 (-) True G200472
TU227419 other downstream 1366515 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 1620722 267530 ~ 268035 (-) True G200299
TU230047 other upstream 1243207 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 1243207 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 1908697 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 2324303 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 2389802 4278908 ~ 4278976 (-) True G203126

Expression Profile