RNA id: TU228101


Basic Information

Item Value
RNA id TU228101
length 270
lncRNA type intronic
GC content 0.44
exon number 1
gene id G201032
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2361220 ~ 2361489 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGTCTGTGATTGGCTTCAATGATCGACGCTTCAAAAACGTTAATAGTAAATAGTTATCAATGATGCTCTTCACCGAGCGCTTACACAGATGCACACAGGAGCGTTTGAAGGCAGGCGTCTATTGCGGAACAGTCCGCTGATAGACGGCTGCTTTCAACCGCTCCCGCTTTCAAAACGTTTTCACATTTAAACACTTTCAACTTTCAAATGCTCCCATGCATTGATCATTGTAGCCAATCACAGACATATCCGATGAGCGTGTCAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228099 lncRNA downstream 2310 2358614 ~ 2358910 (-) True G201030
TU228095 lncRNA downstream 18895 2341801 ~ 2342325 (-) True G201026
TU228010 lncRNA downstream 220795 2114628 ~ 2140425 (-) True G200949
TU228008 lncRNA downstream 247692 2112158 ~ 2113528 (-) True G200948
TU227978 lncRNA downstream 330986 2029820 ~ 2030234 (-) True G200919
TU228103 lncRNA upstream 6346 2367835 ~ 2368079 (-) True G201034
TU228106 lncRNA upstream 78321 2439810 ~ 2440146 (-) True G201037
TU228119 lncRNA upstream 124523 2486012 ~ 2486242 (-) True G201050
TU228134 lncRNA upstream 258133 2619622 ~ 2619869 (-) True G201065
TU228179 lncRNA upstream 357780 2719269 ~ 2719508 (-) True G201110
CI01000047_02317565_02318902.mRNA mRNA downstream 42257 2317199 ~ 2318963 (-) True CI01000047_02317565_02318902
CI01000047_01824882_01828103.mRNA mRNA downstream 532268 1824882 ~ 1828952 (-) True CI01000047_01824882_01828103
CI01000047_01823330_01823581.mRNA mRNA downstream 537639 1823272 ~ 1823581 (-) True CI01000047_01823330_01823581
CI01000047_01813106_01813800.mRNA mRNA downstream 547098 1812857 ~ 1814122 (-) True CI01000047_01813106_01813800
CI01000047_01708628_01744282.mRNA mRNA downstream 616938 1708520 ~ 1744282 (-) False CI01000047_01708628_01744282
CI01000047_02480919_02482057.mRNA mRNA upstream 118962 2480451 ~ 2483286 (-) True CI01000047_02480919_02482057
CI01000047_02507950_02519956.mRNA mRNA upstream 146119 2507608 ~ 2520199 (-) True CI01000047_02507950_02519956
CI01000047_02524134_02533163.mRNA mRNA upstream 162625 2524114 ~ 2533351 (-) True CI01000047_02524134_02533163
CI01000047_02575122_02577946.mRNA mRNA upstream 212916 2574405 ~ 2577994 (-) True CI01000047_02575122_02577946
CI01000047_02594920_02598778.mRNA mRNA upstream 233431 2594920 ~ 2598954 (-) True CI01000047_02594920_02598778
TU227734 other downstream 645703 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 1526749 833941 ~ 834471 (-) True G200472
TU227419 other downstream 1838978 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2093185 267530 ~ 268035 (-) True G200299
TU230047 other upstream 770824 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 770824 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 1436314 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1851920 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1917419 4278908 ~ 4278976 (-) True G203126

Expression Profile