RNA id: TU227009


Basic Information

Item Value
RNA id TU227009
length 222
lncRNA type intronic
GC content 0.34
exon number 1
gene id G200036
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2365055 ~ 2365276 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACCATTGATATTCAAGAGACATTTAGAAACCAAACACTCAAACTAAAAATTAAACTACACAACAACAAAGTCTAGATTATTTTCTCAGCTCTAGGTAGCTCAGGTTTCATTCACTCATTCACAATTTTGGGGTTCAAAAAAAAAAAAAAAAAGGTATCAAAGTATGTCCTCCTTGATCAAAGCTTTCATCATAAGTTCTTGTCCCATGAGTCCTGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227008 lncRNA upstream 1235 2363608 ~ 2363820 (+) True G200035
TU227006 lncRNA upstream 3549 2361275 ~ 2361506 (+) True G200033
TU227005 lncRNA upstream 3922 2360793 ~ 2361133 (+) True G200032
TU227000 lncRNA upstream 11511 2353291 ~ 2353544 (+) True G200027
TU226998 lncRNA upstream 12786 2352060 ~ 2352269 (+) True G200025
TU226978 lncRNA downstream 14758 2380034 ~ 2380431 (+) True G200010
TU227016 lncRNA downstream 15397 2380673 ~ 2380985 (+) True G200040
TU227017 lncRNA downstream 18021 2383297 ~ 2383498 (+) True G200041
TU227035 lncRNA downstream 53282 2418558 ~ 2418916 (+) True G200059
TU227036 lncRNA downstream 54896 2420172 ~ 2421350 (+) True G200060
CI01000047_02265701_02270952.mRNA mRNA upstream 93390 2265701 ~ 2271665 (+) True CI01000047_02265701_02270952
CI01000047_02233861_02257560.mRNA mRNA upstream 106633 2233593 ~ 2258422 (+) True CI01000047_02233861_02257560
CI01000047_02105957_02212505.mRNA mRNA upstream 152541 2105957 ~ 2212514 (+) True CI01000047_02105957_02212505
CI01000047_01838291_01856228.mRNA mRNA upstream 508466 1837443 ~ 1856589 (+) True CI01000047_01838291_01856228
CI01000047_01831728_01834017.mRNA mRNA upstream 531038 1831728 ~ 1834017 (+) True CI01000047_01831728_01834017
CI01000047_02496216_02496407.mRNA mRNA downstream 130940 2496216 ~ 2496521 (+) True CI01000047_02496216_02496407
CI01000047_02498979_02505234.mRNA mRNA downstream 133298 2498574 ~ 2505743 (+) True CI01000047_02498979_02505234
CI01000047_02562428_02569496.mRNA mRNA downstream 197017 2562293 ~ 2570388 (+) True CI01000047_02562428_02569496
CI01000047_02581276_02587652.mRNA mRNA downstream 215643 2580919 ~ 2589521 (+) True CI01000047_02581276_02587652
CI01000047_02602977_02614833.mRNA mRNA downstream 237701 2602977 ~ 2615082 (+) True CI01000047_02602977_02614833
TU226970 other upstream 46093 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 612218 1751469 ~ 1752837 (+) True G199784
TU226298 other upstream 1399599 929871 ~ 965456 (+) True G199386
TU226299 other upstream 1532445 829007 ~ 829018 (+) True G199387
TU226313 other upstream 1547971 816480 ~ 817084 (+) True G199401
TU227053 other downstream 155320 2520596 ~ 2577997 (+) True G200076
TU228278 other downstream 653429 3018705 ~ 3088187 (+) True G201186
TU228535 other downstream 1331240 3696516 ~ 3701860 (+) True G201387
TU228781 other downstream 2050537 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 4450441 6815717 ~ 6816118 (+) True G202382

Expression Profile