RNA id: TU228106


Basic Information

Item Value
RNA id TU228106
length 316
lncRNA type intronic
GC content 0.40
exon number 2
gene id G201037
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2439810 ~ 2440146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGCATGTGGCATTCAAGCTCACATCGTAAAATGTACAGAGGCAGCTGTCCGGGTAGTGAGTCAAATGGGCAGCTTATAAAAAGATCCACATGTGGTCCTCTAAGGTTAGTTGCCCCCACTCCAAACACAGAAGGAGAACAGTGGGGATAATAAATAAATAAATAAATAAAAGTAAAAAAAAAAAAAAAACCCAGAATGAAACAAAAAAGCAGGAAAAACACCACCAAACTTTCACCTTTTTAGGTCGGATCTTCTGTCACACAAACTGAGCTGAACTTAAATAGGGGAGATAATGACACTAGCACACCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228103 lncRNA downstream 71731 2367835 ~ 2368079 (-) True G201034
TU228101 lncRNA downstream 78321 2361220 ~ 2361489 (-) True G201032
TU228099 lncRNA downstream 80900 2358614 ~ 2358910 (-) True G201030
TU228095 lncRNA downstream 97485 2341801 ~ 2342325 (-) True G201026
TU228010 lncRNA downstream 299385 2114628 ~ 2140425 (-) True G200949
TU228119 lncRNA upstream 45866 2486012 ~ 2486242 (-) True G201050
TU228134 lncRNA upstream 179476 2619622 ~ 2619869 (-) True G201065
TU228179 lncRNA upstream 279123 2719269 ~ 2719508 (-) True G201110
TU228193 lncRNA upstream 317320 2757466 ~ 2757902 (-) True G201124
TU229995 lncRNA upstream 317952 2758098 ~ 2758353 (-) True G202683
CI01000047_02317565_02318902.mRNA mRNA downstream 120847 2317199 ~ 2318963 (-) True CI01000047_02317565_02318902
CI01000047_01824882_01828103.mRNA mRNA downstream 610858 1824882 ~ 1828952 (-) True CI01000047_01824882_01828103
CI01000047_01823330_01823581.mRNA mRNA downstream 616229 1823272 ~ 1823581 (-) True CI01000047_01823330_01823581
CI01000047_01813106_01813800.mRNA mRNA downstream 625688 1812857 ~ 1814122 (-) True CI01000047_01813106_01813800
CI01000047_01708628_01744282.mRNA mRNA downstream 695528 1708520 ~ 1744282 (-) False CI01000047_01708628_01744282
CI01000047_02480919_02482057.mRNA mRNA upstream 40305 2480451 ~ 2483286 (-) True CI01000047_02480919_02482057
CI01000047_02507950_02519956.mRNA mRNA upstream 67462 2507608 ~ 2520199 (-) True CI01000047_02507950_02519956
CI01000047_02524134_02533163.mRNA mRNA upstream 83968 2524114 ~ 2533351 (-) True CI01000047_02524134_02533163
CI01000047_02575122_02577946.mRNA mRNA upstream 134259 2574405 ~ 2577994 (-) True CI01000047_02575122_02577946
CI01000047_02594920_02598778.mRNA mRNA upstream 154774 2594920 ~ 2598954 (-) True CI01000047_02594920_02598778
TU227734 other downstream 724293 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 1605339 833941 ~ 834471 (-) True G200472
TU227419 other downstream 1917568 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2171775 267530 ~ 268035 (-) True G200299
TU230047 other upstream 692167 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 692167 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 1357657 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1773263 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1838762 4278908 ~ 4278976 (-) True G203126

Expression Profile