RNA id: TU227145


Basic Information

Item Value
RNA id TU227145
length 369
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G200158
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2657992 ~ 2666602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTTTAATTTCCAACCTATTGTTGTGCTTTAGTCTTTCCTTTAACAGGTTCCGAGGAGGCGTGAAGAGAAGCACACAACAAAGCGAATCCGTTTCAGGAACTTTACTCATTAAACCACAGCTTTACAACAGCGGGGGTTTATGCTCTTGCCCAGCGCTGATGGGTTTATATACAACCATCCGCACCGAAGCCTGCGAGCATACTGACGCTAAACATAAACAAACAGTGAACTAAACCCCGCGTGATGACGTAGCCACATCTGATTGGCTAATACAGAACTTATTATGAATACATGAAATAACAGTAACACAAACAACTTATTTTAATTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227122 lncRNA upstream 40722 2617010 ~ 2617270 (+) True G200136
TU227118 lncRNA upstream 58995 2596436 ~ 2598997 (+) True G200133
TU227113 lncRNA upstream 62519 2595150 ~ 2595473 (+) True G200132
TU227111 lncRNA upstream 71117 2585450 ~ 2586875 (+) True G200130
TU227071 lncRNA upstream 77586 2579949 ~ 2580406 (+) True G200090
TU228232 lncRNA downstream 204652 2871254 ~ 2871454 (+) True G201156
TU228236 lncRNA downstream 209245 2875847 ~ 2876068 (+) True G201160
TU228241 lncRNA downstream 260882 2927484 ~ 2927769 (+) True G201165
TU228244 lncRNA downstream 265808 2932410 ~ 2932614 (+) True G201168
TU228199 lncRNA downstream 299246 2965848 ~ 2966609 (+) True G201127
CI01000047_02602977_02614833.mRNA mRNA upstream 42910 2602977 ~ 2615082 (+) True CI01000047_02602977_02614833
CI01000047_02581276_02587652.mRNA mRNA upstream 68471 2580919 ~ 2589521 (+) True CI01000047_02581276_02587652
CI01000047_02562428_02569496.mRNA mRNA upstream 87604 2562293 ~ 2570388 (+) True CI01000047_02562428_02569496
CI01000047_02498979_02505234.mRNA mRNA upstream 152249 2498574 ~ 2505743 (+) True CI01000047_02498979_02505234
CI01000047_02496216_02496407.mRNA mRNA upstream 161471 2496216 ~ 2496521 (+) True CI01000047_02496216_02496407
CI01000047_02738296_02744806.mRNA mRNA downstream 71270 2737872 ~ 2745013 (+) True CI01000047_02738296_02744806
CI01000047_02779424_02823789.mRNA mRNA downstream 112822 2779424 ~ 2823789 (+) True CI01000047_02779424_02823789
CI01000047_02881833_02887627.mRNA mRNA downstream 215231 2881833 ~ 2887744 (+) True CI01000047_02881833_02887627
CI01000047_02889253_02916373.mRNA mRNA downstream 222651 2889253 ~ 2916436 (+) True CI01000047_02889253_02916373
CI01000047_02945353_02965219.mRNA mRNA downstream 278751 2945353 ~ 2965377 (+) True CI01000047_02945353_02965219
TU227053 other upstream 79995 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 339030 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 905155 1751469 ~ 1752837 (+) True G199784
TU226298 other upstream 1692536 929871 ~ 965456 (+) True G199386
TU226299 other upstream 1825382 829007 ~ 829018 (+) True G199387
TU228278 other downstream 352103 3018705 ~ 3088187 (+) True G201186
TU228535 other downstream 1029914 3696516 ~ 3701860 (+) True G201387
TU228781 other downstream 1749211 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 4149115 6815717 ~ 6816118 (+) True G202382

Expression Profile