RNA id: TU230044


Basic Information

Item Value
RNA id TU230044
length 210
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G202732
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2881323 ~ 2881532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATATCTTTTCATGTGACAACACTGAAGAAATGACACTTTGCTACAATGTAAAGTAGTGAGTGTACAGCTTGTATAACAGTGTAAATTTGCTGTCCACTCAAAATAACTCAACACACAGCCATTAATGTCTAAACCACTGGCCACAAAAGTGAGTACACCCCTAAGTAAAAATGTCCAAATTGGGCCCAATTAGCCATTTTCTCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230043 lncRNA downstream 1636 2879297 ~ 2879687 (-) True G202731
TU230037 lncRNA downstream 5742 2875193 ~ 2875581 (-) True G202725
TU230031 lncRNA downstream 13290 2867777 ~ 2868033 (-) True G202719
TU229995 lncRNA downstream 122970 2758098 ~ 2758353 (-) True G202683
TU228193 lncRNA downstream 123421 2757466 ~ 2757902 (-) True G201124
TU230091 lncRNA upstream 4674 2886206 ~ 2886518 (-) True G202766
TU230092 lncRNA upstream 7046 2888578 ~ 2888795 (-) True G202767
TU230099 lncRNA upstream 14532 2896064 ~ 2899817 (-) True G202774
TU230063 lncRNA upstream 84322 2965854 ~ 2966599 (-) True G202740
TU230072 lncRNA upstream 85445 2966977 ~ 2972961 (-) True G202747
CI01000047_02829408_02858055.mRNA mRNA downstream 22761 2828456 ~ 2858562 (-) True CI01000047_02829408_02858055
CI01000047_02826142_02826444.mRNA mRNA downstream 54879 2825743 ~ 2826444 (-) True CI01000047_02826142_02826444
CI01000047_02747442_02755248.mRNA mRNA downstream 126075 2746901 ~ 2755248 (-) True CI01000047_02747442_02755248
CI01000047_02615438_02617123.mRNA mRNA downstream 264051 2615270 ~ 2617272 (-) True CI01000047_02615438_02617123
CI01000047_02594920_02598778.mRNA mRNA downstream 282369 2594920 ~ 2598954 (-) True CI01000047_02594920_02598778
CI01000047_02939538_02940848.mRNA mRNA upstream 57961 2939493 ~ 2942418 (-) True CI01000047_02939538_02940848
CI01000047_03002349_03064708.mRNA mRNA upstream 120817 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_03080182_03082134.mRNA mRNA upstream 198554 3080086 ~ 3082134 (-) True CI01000047_03080182_03082134
CI01000047_03085017_03085558.mRNA mRNA upstream 203463 3084995 ~ 3085691 (-) True CI01000047_03085017_03085558
CI01000047_03087382_03094014.mRNA mRNA upstream 205548 3087080 ~ 3096017 (-) True CI01000047_03087382_03094014
TU227734 other downstream 1165806 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2046852 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2359081 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2613288 267530 ~ 268035 (-) True G200299
TU230047 other upstream 250781 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 250781 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 916271 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1331877 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1397376 4278908 ~ 4278976 (-) True G203126

Expression Profile