RNA id: TU230063


Basic Information

Item Value
RNA id TU230063
length 746
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G202740
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2965854 ~ 2966599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATTTGCACATTTGAATTTTGTGGTGTCAAATATTTCACCTATTTACAATTTATCTTCACACAAGTATGAAAACTGTACAATAAAACCAGGAGTGTGTAGAAAACAAACCAAGAATTAATGATACAATTTACATTTTTCATCAAGATACATCACCGAATCAAAAAATGTTTAGAGACCCAATATTTACAGATATTAGGGTTAAAATCCATGATAAACAATGCATTTCATCAAATAATTGAACCCGAAATCACACAAAAATGACTCAAATTTTATTATTATACCACACATTCTTATTCTTTAACTGGCAAATGTCAGTTCATTTTAGAAAATGTACATTAAGTACACAAATGCCTGAATGCATTATTCACATATAGAGTTTGTGGGCTCTACTGTCACACATAAGATTTAGTTTTAAAATTAGGCTACATATTAGTGTTTTAAAAGAAGAACAATAGAGTGTCGACAGCGAAAATGCAATAATTCTTCATCAAAATGCTTCTGAATACCTCACACACTAAATGCATTATTCCTGCACTATTAACTGCATCAGACTTATTTTTACAATTTCTATTGCACTTCAGTATGGTCTTGCTCTACATAACAAAACCGTTTAAAAAACATCACATTTTATAAAATCTCAGAACCTCTGTTCTATTCTACTGGTAAAATCTCAAGTGCATTAAAGGGATAGTTCACCCAAAAATGAAAATTTTGTCATTATTTACTCACCCTCATGTCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230099 lncRNA downstream 66037 2896064 ~ 2899817 (-) True G202774
TU230092 lncRNA downstream 77059 2888578 ~ 2888795 (-) True G202767
TU230091 lncRNA downstream 79336 2886206 ~ 2886518 (-) True G202766
TU230044 lncRNA downstream 84322 2881323 ~ 2881532 (-) True G202732
TU230043 lncRNA downstream 86167 2879297 ~ 2879687 (-) True G202731
TU230072 lncRNA upstream 378 2966977 ~ 2972961 (-) True G202747
TU230080 lncRNA upstream 111394 3077993 ~ 3088700 (-) True G202755
TU230131 lncRNA upstream 131242 3097841 ~ 3100120 (-) True G202792
TU230082 lncRNA upstream 146683 3113282 ~ 3113978 (-) True G202757
TU230049 lncRNA upstream 165714 3132313 ~ 3133652 (-) False G202733
CI01000047_02939538_02940848.mRNA mRNA downstream 23436 2939493 ~ 2942418 (-) True CI01000047_02939538_02940848
CI01000047_02829408_02858055.mRNA mRNA downstream 107292 2828456 ~ 2858562 (-) True CI01000047_02829408_02858055
CI01000047_02826142_02826444.mRNA mRNA downstream 139410 2825743 ~ 2826444 (-) True CI01000047_02826142_02826444
CI01000047_02747442_02755248.mRNA mRNA downstream 210606 2746901 ~ 2755248 (-) True CI01000047_02747442_02755248
CI01000047_02615438_02617123.mRNA mRNA downstream 348582 2615270 ~ 2617272 (-) True CI01000047_02615438_02617123
CI01000047_03002349_03064708.mRNA mRNA upstream 35750 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_03080182_03082134.mRNA mRNA upstream 113487 3080086 ~ 3082134 (-) True CI01000047_03080182_03082134
CI01000047_03085017_03085558.mRNA mRNA upstream 118396 3084995 ~ 3085691 (-) True CI01000047_03085017_03085558
CI01000047_03087382_03094014.mRNA mRNA upstream 120481 3087080 ~ 3096017 (-) True CI01000047_03087382_03094014
CI01000047_03115498_03127047.mRNA mRNA upstream 148588 3115187 ~ 3128105 (-) True CI01000047_03115498_03127047
TU227734 other downstream 1250337 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2131383 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2443612 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2697819 267530 ~ 268035 (-) True G200299
TU230047 other upstream 165714 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 165714 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 831204 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1246810 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1312309 4278908 ~ 4278976 (-) True G203126

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU125367 True 618 lncRNA 0.29 2 NC_056710.1 745363 ~ 746015 (+)