RNA id: TU230080


Basic Information

Item Value
RNA id TU230080
length 298
lncRNA type read_through
GC content 0.34
exon number 2
gene id G202755
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3077993 ~ 3088700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTCCGAAGATGAACGAAGTTCTTACAGGTTTGGGACAACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAATGGTTTACTGATACTGCACCAGCGATTAAAGACATGCTGCCTTAAATTTATTCTTTTTTTTTTTATCTGATGACATATCCGTTAAATATCCGTTTATGTAAGAGCAGATCCCTCCATATTATTTATTGAATAAGGTTGTTGATTTGAATACTGCCTGCTGTAGATTTTAACTTGCATATTTATACGACTTCTGAACTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230072 lncRNA downstream 105032 2966977 ~ 2972961 (-) True G202747
TU230063 lncRNA downstream 111394 2965854 ~ 2966599 (-) True G202740
TU230099 lncRNA downstream 178176 2896064 ~ 2899817 (-) True G202774
TU230092 lncRNA downstream 189198 2888578 ~ 2888795 (-) True G202767
TU230091 lncRNA downstream 191475 2886206 ~ 2886518 (-) True G202766
TU230131 lncRNA upstream 9141 3097841 ~ 3100120 (-) True G202792
TU230082 lncRNA upstream 24582 3113282 ~ 3113978 (-) True G202757
TU230049 lncRNA upstream 43613 3132313 ~ 3133652 (-) False G202733
TU230051 lncRNA upstream 43613 3132313 ~ 3133652 (-) False G202733
TU230194 lncRNA upstream 243466 3332166 ~ 3334561 (-) True G202847
CI01000047_03002349_03064708.mRNA mRNA downstream 12306 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_02939538_02940848.mRNA mRNA downstream 135575 2939493 ~ 2942418 (-) True CI01000047_02939538_02940848
CI01000047_02829408_02858055.mRNA mRNA downstream 219431 2828456 ~ 2858562 (-) True CI01000047_02829408_02858055
CI01000047_02826142_02826444.mRNA mRNA downstream 251549 2825743 ~ 2826444 (-) True CI01000047_02826142_02826444
CI01000047_02747442_02755248.mRNA mRNA downstream 322745 2746901 ~ 2755248 (-) True CI01000047_02747442_02755248
CI01000047_03115498_03127047.mRNA mRNA upstream 26487 3115187 ~ 3128105 (-) True CI01000047_03115498_03127047
CI01000047_03136341_03145907.mRNA mRNA upstream 47212 3135912 ~ 3145907 (-) True CI01000047_03136341_03145907
CI01000047_03149971_03159412.mRNA mRNA upstream 61260 3149960 ~ 3159412 (-) True CI01000047_03149971_03159412
CI01000047_03163127_03175326.mRNA mRNA upstream 74166 3162866 ~ 3175326 (-) True CI01000047_03163127_03175326
CI01000047_03177108_03216092.mRNA mRNA upstream 88383 3177083 ~ 3216132 (-) True CI01000047_03177108_03216092
TU227734 other downstream 1362476 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2243522 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2555751 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2809958 267530 ~ 268035 (-) True G200299
TU230047 other upstream 43613 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 43613 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 709103 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1124709 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1190208 4278908 ~ 4278976 (-) True G203126

Expression Profile