RNA id: TU230082


Basic Information

Item Value
RNA id TU230082
length 697
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G202757
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3113282 ~ 3113978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAGAGGGAACGGCCAGTTCTTGAACCTATAAGGGGATTTGAAGTGAGTTTGATGGGGGAGCAGCTCCTGAGATTCACTCAGTTTTAATCTTTAAATACCATGCTTATTTAAAGCAGACTGCTGAAGCCTCTAGATATCTCCTCTGGCAGAAGGCACTAACCCAATTCGTAAGGTCAAAGTCTCCTTTTTCTGATCTTTTGAGAATTTGATGACAGCGGTAACATTTGTGAACAAACTGTTTATTTCAGGTAGCTGCACGCTGATATCAAAAACAGGTCATTATGCTCTGCTTTAGGAAAAGTACTAGGCCCCGATTTGACCAACCAAACAAATGTATATAGCCTTTATAAAATGACCACTGAAGAGATGTAGTAAATGTACTAACAAAAAAATTCTTAAGCAACATCCGCTTGTTAGAAAAATCAGTTAAGGCCTTTAATCCAATAACAGGGGCCACGGCGGTCTAAATAACTTCACTGGAACTACTGACTGCACTTAAATGTCAAACCCTCTAAATCCAGATCAGACAGAAGAGGCCAAAAGTGAGTAAATCTCATCTCAGGTTTATGGTTTGTACACTTTGTTAGGCTTGTGTATAAAATCTTTTGGAGTGAGCATGGAACTGATAACCGATCCTCTTATTTACTGAATACTACTGCACATATAAGATACTGTAAATTATGAACAAATAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230131 lncRNA downstream 13162 3097841 ~ 3100120 (-) True G202792
TU230080 lncRNA downstream 24582 3077993 ~ 3088700 (-) True G202755
TU230072 lncRNA downstream 140321 2966977 ~ 2972961 (-) True G202747
TU230063 lncRNA downstream 146683 2965854 ~ 2966599 (-) True G202740
TU230099 lncRNA downstream 213465 2896064 ~ 2899817 (-) True G202774
TU230049 lncRNA upstream 18335 3132313 ~ 3133652 (-) False G202733
TU230051 lncRNA upstream 18335 3132313 ~ 3133652 (-) False G202733
TU230194 lncRNA upstream 218188 3332166 ~ 3334561 (-) True G202847
TU230191 lncRNA upstream 218872 3332850 ~ 3432629 (-) True G202844
TU230189 lncRNA upstream 285871 3399849 ~ 3407492 (-) True G202842
CI01000047_03087382_03094014.mRNA mRNA downstream 17265 3087080 ~ 3096017 (-) True CI01000047_03087382_03094014
CI01000047_03085017_03085558.mRNA mRNA downstream 27591 3084995 ~ 3085691 (-) True CI01000047_03085017_03085558
CI01000047_03080182_03082134.mRNA mRNA downstream 31148 3080086 ~ 3082134 (-) True CI01000047_03080182_03082134
CI01000047_03002349_03064708.mRNA mRNA downstream 47595 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_02939538_02940848.mRNA mRNA downstream 170864 2939493 ~ 2942418 (-) True CI01000047_02939538_02940848
CI01000047_03115498_03127047.mRNA mRNA upstream 1209 3115187 ~ 3128105 (-) True CI01000047_03115498_03127047
CI01000047_03136341_03145907.mRNA mRNA upstream 21934 3135912 ~ 3145907 (-) True CI01000047_03136341_03145907
CI01000047_03149971_03159412.mRNA mRNA upstream 35982 3149960 ~ 3159412 (-) True CI01000047_03149971_03159412
CI01000047_03163127_03175326.mRNA mRNA upstream 48888 3162866 ~ 3175326 (-) True CI01000047_03163127_03175326
CI01000047_03177108_03216092.mRNA mRNA upstream 63105 3177083 ~ 3216132 (-) True CI01000047_03177108_03216092
TU227734 other downstream 1397765 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2278811 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2591040 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2845247 267530 ~ 268035 (-) True G200299
TU230047 other upstream 18335 3132313 ~ 3133652 (-) False G202733
TU230052 other upstream 18335 3132313 ~ 3133652 (-) True G202733
TU230337 other upstream 683825 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1099431 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1164930 4278908 ~ 4278976 (-) True G203126

Expression Profile