RNA id: TU230052


Basic Information

Item Value
RNA id TU230052
length 1084
RNA type TUCP
GC content 0.43
exon number 4
gene id G202733
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3132313 ~ 3133652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGTTCAAGACAACCTTTGATAAAACTTTGGTGATAGCGAGTTTACTAGATCGATCACTGAAATCAATAATTAATTCATACTTGGTTTTTTTCAAAGTTTATTTGAAAAAAAGAAAGAAAGAAAAAAAAACCTTACACCATGCACTTAATTGTGCATTAAAAATGATTATTACACATTTTCACTTTTGCTTTGTGCAAAATTATTATGCATTCTCTTTTATTAAGTAATATGCTTATTTTTGGTATTTACATATCAGCTAGAAATATAAAACTTGACAGATTACATCCTCAGAAGCTCTTTCGTGCAGTGGTCATTTAGGCAGCGTCACAGAAAACCAGTGTGTGCGACACGTCTGTATTTGCCCAGGAAGCAGATCTCCTGTTTCTTCTCTGTCACAATCTTCTGGTCTTCAGGCCTGAGGCCTTCAGGGTGTCTGGAGAATATGAAGGAATAACCGTCCAAGCAGGTTCCGTTCTCATCAAGCTCTCTGCAGGAGTAGTGGATGGCATAGTTTTCATAGTCGGTGTCAATGATCCAGTGGTCATCATCCAGTCTGGAGATATGCAGCAGCTCCCCAGTATTTCATCTTGAACCTGGCGGGGTCTTCGGTATCTTCAAACGTGCCAAACATGTTGGCGCACACCTCCCAGTTGAGAATGATGACTCTGCCAACAGCGGTGGCTGTCATGGTTCCATCTTCCTCCACTTTGAAATGGGCAACAATATTATCAAGAAGGAAAAGACCAACGGGGTCTTTCTTGGCCACGGCATACCATGTTCCTTGATACTGCAAGGTCAGTGGAAAAGTATGAGGAACAGAAGCTCAAAAACAACATGTGGTTGAAGCAAAACACTGGTTGACTTACCCTCGTCCTGTCAAATTCCTGTTTGACGGTGATGTTGCTCACCAGACAGTCCTGCGCCCAGCATGTGGCCAGGACACAGAGAACTATGCAGAACCTGAGCATGGTGCCTCTGTGCTCGAGCTGTGAAAAATCAGTAGAACAGTTAGAAAAACACCAACAAATGCACCGCTTAGTCGTCCGTCAAACAAATCCTAATGTGCGTACCTTGATCACGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230082 lncRNA downstream 18335 3113282 ~ 3113978 (-) True G202757
TU230131 lncRNA downstream 32193 3097841 ~ 3100120 (-) True G202792
TU230080 lncRNA downstream 43613 3077993 ~ 3088700 (-) True G202755
TU230072 lncRNA downstream 159352 2966977 ~ 2972961 (-) True G202747
TU230063 lncRNA downstream 165714 2965854 ~ 2966599 (-) True G202740
TU230194 lncRNA upstream 198514 3332166 ~ 3334561 (-) True G202847
TU230191 lncRNA upstream 199198 3332850 ~ 3432629 (-) True G202844
TU230189 lncRNA upstream 266197 3399849 ~ 3407492 (-) True G202842
TU230218 lncRNA upstream 307175 3440827 ~ 3445116 (-) True G202869
TU230220 lncRNA upstream 311563 3445215 ~ 3445658 (-) True G202870
CI01000047_03115498_03127047.mRNA mRNA downstream 4208 3115187 ~ 3128105 (-) True CI01000047_03115498_03127047
CI01000047_03087382_03094014.mRNA mRNA downstream 36296 3087080 ~ 3096017 (-) True CI01000047_03087382_03094014
CI01000047_03085017_03085558.mRNA mRNA downstream 46622 3084995 ~ 3085691 (-) True CI01000047_03085017_03085558
CI01000047_03080182_03082134.mRNA mRNA downstream 50179 3080086 ~ 3082134 (-) True CI01000047_03080182_03082134
CI01000047_03002349_03064708.mRNA mRNA downstream 66626 3002349 ~ 3065687 (-) True CI01000047_03002349_03064708
CI01000047_03136341_03145907.mRNA mRNA upstream 2260 3135912 ~ 3145907 (-) True CI01000047_03136341_03145907
CI01000047_03149971_03159412.mRNA mRNA upstream 16308 3149960 ~ 3159412 (-) True CI01000047_03149971_03159412
CI01000047_03163127_03175326.mRNA mRNA upstream 29214 3162866 ~ 3175326 (-) True CI01000047_03163127_03175326
CI01000047_03177108_03216092.mRNA mRNA upstream 43431 3177083 ~ 3216132 (-) True CI01000047_03177108_03216092
CI01000047_03223945_03241971.mRNA mRNA upstream 89971 3223623 ~ 3242716 (-) True CI01000047_03223945_03241971
TU227734 other downstream 1416796 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2297842 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2610071 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU227300 other downstream 2864278 267530 ~ 268035 (-) True G200299
TU230337 other upstream 664151 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 1079757 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 1145256 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 1440683 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1740727 4874379 ~ 4876734 (-) True G203286

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU125320 False 719 lncRNA 0.48 4 NC_053120.1 3128300 ~ 3162870 (-)
tiger barb (Puntius tetrazona) TU125320 False 1875 lncRNA 0.39 4 NC_056710.1 623845 ~ 626394 (+)