RNA id: TU230218


Basic Information

Item Value
RNA id TU230218
length 538
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G202869
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3440827 ~ 3445116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTTGAAAAATTTTTTTTAAAAAAATAACAAAACTGGGTTCTTCTTTCTTTCACAGTTATAAATAACATGGACAACATGAGGGACAACGACTTCTCAGGATCAAAATAAACAATTCCACTGCTTTCCAGGGCTTGCACCCCTTTCACTGTCCTTAAAATGGTTCAGTCCAGTACAATGTGAGGGAATGCAAGGACACTGGAGGACCCAGAAAGGAAGGACCTGTAAAATCATGTCCCCCTCACGAGGCCGCTGTGGCCCCCTTCACACAGGCCTCAAAGGCTTCCAGCAGCTCCTTACAGCCCTCTGCTCCTATCCCCACTTGTCCAGCTCATCTTTGGGAACCTTGCACTGAGCAGGAACTTCTTCTGGCATTTTTCTTTGTTTGTGTGACAAAAGTCAGTGAGCTGAGGAGAACCTTTAAGGTTTTAAGTACAGGGTGAACAACCAATATATATAGGATTACTTCCCAGTCTGTGGGTGGGAAGGAGGAGGAAGAGAGGGAGGAGAAACAGGCTGCAAAATGTGTCAGAGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230191 lncRNA downstream 8198 3332850 ~ 3432629 (-) True G202844
TU230189 lncRNA downstream 33335 3399849 ~ 3407492 (-) True G202842
TU230194 lncRNA downstream 106266 3332166 ~ 3334561 (-) True G202847
TU230049 lncRNA downstream 307175 3132313 ~ 3133652 (-) False G202733
TU230051 lncRNA downstream 307175 3132313 ~ 3133652 (-) False G202733
TU230220 lncRNA upstream 99 3445215 ~ 3445658 (-) True G202870
TU230230 lncRNA upstream 9414 3454530 ~ 3458840 (-) True G202877
TU230238 lncRNA upstream 26371 3471487 ~ 3471707 (-) True G202880
TU230185 lncRNA upstream 61805 3506921 ~ 3509108 (-) True G202840
TU230252 lncRNA upstream 95275 3540391 ~ 3596078 (-) False G202894
CI01000047_03412414_03435209.mRNA mRNA downstream 4644 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 112066 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03271413_03302291.mRNA mRNA downstream 138456 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03258353_03261127.mRNA mRNA downstream 179002 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03223945_03241971.mRNA mRNA downstream 198111 3223623 ~ 3242716 (-) True CI01000047_03223945_03241971
CI01000047_03514753_03523245.mRNA mRNA upstream 69335 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03689400_03699969.mRNA mRNA upstream 244284 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03713156_03716003.mRNA mRNA upstream 268040 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03741720_03750331.mRNA mRNA upstream 295954 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 339626 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
TU230047 other downstream 307175 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 307175 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1725310 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2606356 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2918585 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 352687 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 768293 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 833792 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 1129219 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1429263 4874379 ~ 4876734 (-) True G203286

Expression Profile