RNA id: TU230185


Basic Information

Item Value
RNA id TU230185
length 2168
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G202840
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3506921 ~ 3509108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATATATAATTTCTGAAGAAGTAGACGGGTTCAGGTGTGTTTTTGGAGAGCTCTCTGGCCGTTTGGCTTTGTTCATGTTTGCATAGACCCCAGTAGATCCTGCTGGATCCCCAGCGGTGGCCATAAACCACACTATCCAATCTCCTGATCTCCAGACCGCCCAGATTTTCCAGAATATCATTCGTATGCTTGGCCTGGATCTGATCCAGGATATCTTCTGGACAAGGTAGTTTCACCACTGGTAGATCAGCACTGGACTCATCCCTATGGGAGTAAAGGGTAAACTGTTAAGTATTCACCTATATGAAACACGATCCAATGGTGCTAATTCAAAGATCAGTAAATTAAGTACAAAAAAAACCAACATGTTTCCCTGATACATCAGTCTGAATCCAGCATCATTCTCCACCAACTGTTCCAACACCATCTTCCCTTTGTAATAAACCTTAATCTGGAAAAATGTCTCTGTAAAGGAAATGAACAAATAGAAATAAAGCTGTGTGAGTAAATAAACACCAGTAATTTATGTAAGTATGTCATGGTCTTGAGTTCTGCCTACCCAGTTTTGGTTCAGGAACTGCAGCCTGATCACCTTCACCATGTGGTTGACACACCACCGGCTGCTGATATGCTGGAGAATGATGATTCACAGCCGTCGTCCCCTCAGTGGGTGAAATCTGCCCCAAACCACCAACAGCACCCCCAGCTGAAGAGAAGGGTCCGTCAGTGTCCACATTTTGAAAATGGGTCATCTGAGTAAACTGGGGTTCTGTGCATGGATTCATTTCTTGGAGGAGTCCTTGTTCCTCAATCCCCAAATAGAACTGATCTGGATTCCAAACTTCATAGACTGAAACATATTACACACATTACCGGTCAAAAGTTCTTGAAAGAAGTCTCTTCTGCTCACCAAGGCTGCATTTATTTGATAAAAATACTGTAAGAACAGTAACATTGTGAAATAATTTTACAATTTAAAATAGCTGTTTTCTATTGTAATATATTTTAAAATGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATTCTTCAGAAATCATTCTATTACGCTGATTTGCTGCTCAAGAAACATTTCTTATCATTTTCAATGTTGATAACAGTTTTGCTGCTTAATATTTGTGTGGAAAACTTGATACTCCTACAATAGTATCCTCTTATGAAAAAGAAGTGTGCTTAATTGTATTAAATGTGCACTTGTAGTGTGCTTCGAAGCTTAAATGAAATAAAAAGCCAATTAAGTGTGTTTAAAGAGAGTATACTATGACTTGTCACACATGTAAAGTACATTATAGGATCCTGTGACACTGAAGACTGAAGAAATGATGGTGACGTAATAAGCCTTGTCATCACAGAATATATTACATTTTTAAAATATATTCAAACTAGAATAAACAGTTATTTTAAATTATATTATAAAACGGTTAGTTCCTGTCTTTGATTCTGATTAGTCAATAGCTGTTTTATTCACGATAAAACACGGCTATGATCGCTTCACCCAACGGTTCTGTGTTTCACTACACAACACCCTTAGCAAACACTCTTAGCAATATAAACTGTTTGTTCTCAATTGATATTGTTCATTGAAGCTTCCTGTATTATGTAGAAGAGTGTTGTGAGAAAGAGATCGAGTGAGCGAGTTTATTACCATTTTCCTATGTTCATAATAAAAAAATCTGTTTAAATGTCCGATGTATTAACTTGTCCTTTTAACAGTTAAGGGGTTTTCCCATGACTGACAGCGCTGTCACAACATTACTGTTTTTACTATATTTTTTACAGGTTTTTTTTATTAAATAATCGCAGCCTTGGTGAGAATAAGAGACTTCTTTCAAAACAATATTAACAATGACAAATATTTTGTCAACAATATTAACAATAATAATACTCTGTGTGTGTGTGGCTAACAAATTTTTTTAAAATCATATTATAATAAATATACTGTATAAAATATTATCCAATCATACAGACTACAGAAACTCAAATGGCTAAACTATATAGCTAGTCCACATCATATTGTGCTTTGTGCTACAGGCTCCTAAAATGAAAATACATTCTACCTTGTAAGGGACTTTCCTGCAGGTTTAGTCCAGTGAAATGTCCCTCTAAACCTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230238 lncRNA downstream 35214 3471487 ~ 3471707 (-) True G202880
TU230230 lncRNA downstream 48081 3454530 ~ 3458840 (-) True G202877
TU230220 lncRNA downstream 61263 3445215 ~ 3445658 (-) True G202870
TU230218 lncRNA downstream 61805 3440827 ~ 3445116 (-) True G202869
TU230191 lncRNA downstream 74292 3332850 ~ 3432629 (-) True G202844
TU230252 lncRNA upstream 31283 3540391 ~ 3596078 (-) False G202894
TU230255 lncRNA upstream 33126 3542234 ~ 3551219 (-) True G202894
TU230288 lncRNA upstream 91232 3600340 ~ 3602562 (-) True G202911
TU230265 lncRNA upstream 108361 3617469 ~ 3618413 (-) False G202900
TU230266 lncRNA upstream 116218 3625326 ~ 3625869 (-) True G202900
CI01000047_03412414_03435209.mRNA mRNA downstream 70738 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 178160 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03271413_03302291.mRNA mRNA downstream 204550 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03258353_03261127.mRNA mRNA downstream 245096 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03223945_03241971.mRNA mRNA downstream 264205 3223623 ~ 3242716 (-) True CI01000047_03223945_03241971
CI01000047_03514753_03523245.mRNA mRNA upstream 5343 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03689400_03699969.mRNA mRNA upstream 180292 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03713156_03716003.mRNA mRNA upstream 204048 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03741720_03750331.mRNA mRNA upstream 231962 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 275634 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
TU230047 other downstream 373269 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 373269 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1791404 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2672450 833941 ~ 834471 (-) True G200472
TU227419 other downstream 2984679 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 288695 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 704301 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 769800 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 1065227 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1365271 4874379 ~ 4876734 (-) True G203286

Expression Profile