RNA id: TU230288


Basic Information

Item Value
RNA id TU230288
length 825
lncRNA type antisense_over
GC content 0.48
exon number 6
gene id G202911
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3600340 ~ 3602562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACCCAGAAATACAGCACATACTCGGAAGGGGCAGGGCCATCAGGAGGAGGCGGTTTGAAGTCAACCAATAGCACGTAGGCATACAGAAACAGGAAGAGGAAGTACATCAGAACGTTGCCGATAAACGAAGTGACAGGAGCGTACCAGAACTGCCTCCAGCGGGACAACAGAAAGGGCTGCTTAGGTTTGCCGTATGCAGGAGTACCTTTTGTTGGTCGTCTGATATTATTTGAGTCATCTTGCTCGGCTTCACTGTGGTGTTTGATGTCATTGAAGGAGAAGACAGTCTCTCCATAGTGGCAGTCTGTTGCTGAGGGTGGAGGTGCCATCAGTGATTTCTCCCTTTCTGTGTTTTCCTCGTTCCTGAATTTGATGAGGTTGGTGTAGCAGAGAGGAGGAATGATCAGAGCCAGCACCAGTTTCCAGAACTCAGTTCCTCTTTCCATGTCACCCCACCAGATCTGAGACAGAAGCGACTGTACTCCATCGTGGCTGAAGAAAACACGGGCGTCAGCGGCCATGGCCATCTTCAGACAGGTGGCATCACCCCACATACGAGACTTGCGAATCAGTAGCTTATAGGAATCACTTGCTTTGGTTTGGTAGCACATGCTAAACACATCGTGAGCCATATTCTCCAACTTCATGGCCATCTCCTTAATGGAAATCTTGGCCTCTGACTCAATCCCCTGTTTAGACAGCTCCCTCAACAGCTTACATCCTCCCAGAGCCGTCAGAACCGACTCGCCGCACTGAGAGAGAAGATAAATAAGTAAAATTGGTCTAAATTGGTCTTTTTAAATGCTAAAAGTGAATTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230252 lncRNA downstream 4262 3540391 ~ 3596078 (-) False G202894
TU230255 lncRNA downstream 49121 3542234 ~ 3551219 (-) True G202894
TU230185 lncRNA downstream 91232 3506921 ~ 3509108 (-) True G202840
TU230238 lncRNA downstream 128633 3471487 ~ 3471707 (-) True G202880
TU230230 lncRNA downstream 141500 3454530 ~ 3458840 (-) True G202877
TU230265 lncRNA upstream 14907 3617469 ~ 3618413 (-) False G202900
TU230266 lncRNA upstream 22764 3625326 ~ 3625869 (-) True G202900
TU230312 lncRNA upstream 68814 3671376 ~ 3674642 (-) True G202931
TU230313 lncRNA upstream 72829 3675391 ~ 3675650 (-) True G202932
TU230328 lncRNA upstream 83226 3685788 ~ 3687303 (-) True G202942
CI01000047_03514753_03523245.mRNA mRNA downstream 77095 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 164157 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 271579 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03271413_03302291.mRNA mRNA downstream 297969 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03258353_03261127.mRNA mRNA downstream 338515 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03689400_03699969.mRNA mRNA upstream 86838 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03713156_03716003.mRNA mRNA upstream 110594 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03741720_03750331.mRNA mRNA upstream 138508 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 182180 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03855710_03868781.mRNA mRNA upstream 252981 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
TU230047 other downstream 466688 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 466688 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1884823 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2765869 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3078098 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 195241 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 610847 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 676346 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 971773 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1271817 4874379 ~ 4876734 (-) True G203286

Expression Profile