RNA id: TU230312


Basic Information

Item Value
RNA id TU230312
length 2022
lncRNA type inter_gene
GC content 0.39
exon number 9
gene id G202931
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3671376 ~ 3674642 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAACTGAGAACATGACAGACTTTATTTTATTCCCCCCCCAACATTATACATTAAAATGAATAAAATTGTTTACAGATTAGTTGAATCAAGTATGAATTAAAGGCAGTGTTTTGACAAGTCATTCACATGTTGGTGCAAAGGCAAGATAAAACTACCATTTAAAGATAAGAACCAACCCCTTGTGCATAAACCGTACATAAAAGGATAAACCATATTTAGTAAGTTATTACTCCAGATCAGTGAAAAAAAACCTGACTACAGACAAGTGCCACTGAATGACAGTCACAACAAGCACATCTGCTAGATCGAGACCATTCTTTAAAACCTTAAACATTCTTGAATTACTCAAACTAAGAACAGCAGCTTAAATTGATAACCACACTTAAACCAAATTCATTTGTGTCTACACTCAGATGGAGACTAGTCACCTTTAAGCAACTACATTACAGCTCTAAAAGCGTTAGTTGTGTTTCATTCTAAAGTGCAAAACTGAGGGGAAAAAAAATAAATAAATAAATGCCTTGATGGCAAAATAAAGTGTGTCAAGCATGTTTGCAAACACCAATATACAAAACCTCATACACCTGTAAAACAGCAGCTCTTGAGCTTTAGTTGTATAGTAACTTGTTAAAAATAGTGTTGGACATAGAGATACACATACATGAACTAGCAGGATACACACAAAAAAAAAATAAATAAAAAAAATAATAATTAATGAAAGATCCATATAAATCGGACAAGACTGACAAATCTGGAACAAGTAAAACAGTTATTTTTACAATAAAATATTACTCAAAAATAATTTAAGACACTTCATAACATTGTCAGCCGTCCCACTTGAATCCTACCAGTACGCATCAGTTGAGAAATCAAACGCAGGGTAAGGTTCAGAGGTATGACACTCAGAAGAGAGGTCTAGAATGTCCAAGTTAGATGACGTTTGGGATATAAGACCAGTAGCTGTGGTACCGGCCACCTGTGATGTCACGATCCTGCCGTTGACTGGCTGTACACCCCTGAATGTGTCCACCATTAGGGGAGAGTTGGTCACCTTGTTGACGTAAACCCTCATGCTGAACAGGTCAATCAAACCCTGGCTGACTTTGACAGGGTCTTTAAAGATGGTCCAAACCACACCTTCTCTGCAATTTGGTGTGGTCAAAGAGCCAAGATAACGGTAATATTTTGTCCTGTCCACTCCAGGAAGCAGATCATCCATAGAGATATATTGAGTGATGCATGCTTTATCACCTGCATTGGCTATTTTTGTCAGGTAAGAGGTCAAGGTCTTCCAGCTCTCTGGTTTACCAGTGTCATTAGTGGCCTCAATGAAGAAACCAAGTGCAGCCAATATAGTTGAATCATTATGTTTGAGCTTATTCACTATGTGCAGCTCCATAGGGTATCGTTTGCCATCCACAGTGTGTTCAGATCCAGGCATGGCGCTACCATTTCCCCAGTGGAGATGAAACTGCGTACTAGCAAATGAGCCTGGCAGATCACCTCCTTCCACATGCATTCTCTTGTGATCAAGTGTAACTTTAATTGTCTTGCCAGTGTTCTTAATCTCAGTTAAGGTAGTTTTGTCATCGTAGCCAGTGAAGTTGAAAGAGGTCAGATTAGCATTAGCCTGGACATTGGCAGTTGTAATATCGATTGGTGACTGTTGAGTGCCATTACAGTCTTTTTCTGCAATTATGGGCCATGTGATGTCACTACATGATGGCATGTGATAACACCAGGCCACAGACGTTGGTGCGCTGTATGACACGGAGAACAAACAAGCTGCAAGGAAGATCATAAACCAAGCATTCATCATTTTAGTTAACTAAATACAATTTCACTAGTTCAGGTCACTTCTCTTCCAAATAATAGCCAAAACCCAATTCTCTATATTGAATCTGCAGAACCCTACTTTGAAACAGTCGCTCCAAAACCATTAACACTCAAAAGCTTTAAAAGAAGCAAACAAGCTTAGGGTGACGTCAAACACCAAATACTGACAGATGTTGCTCTTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230266 lncRNA downstream 45507 3625326 ~ 3625869 (-) True G202900
TU230265 lncRNA downstream 52963 3617469 ~ 3618413 (-) False G202900
TU230288 lncRNA downstream 68814 3600340 ~ 3602562 (-) True G202911
TU230252 lncRNA downstream 75298 3540391 ~ 3596078 (-) False G202894
TU230255 lncRNA downstream 120157 3542234 ~ 3551219 (-) True G202894
TU230313 lncRNA upstream 749 3675391 ~ 3675650 (-) True G202932
TU230328 lncRNA upstream 11146 3685788 ~ 3687303 (-) True G202942
TU230343 lncRNA upstream 12884 3687526 ~ 3688562 (-) True G202949
TU230408 lncRNA upstream 45475 3720117 ~ 3720493 (-) True G203012
TU230405 lncRNA upstream 46060 3720702 ~ 3721356 (-) True G203010
CI01000047_03514753_03523245.mRNA mRNA downstream 148131 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 235193 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 342615 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03271413_03302291.mRNA mRNA downstream 369005 3269915 ~ 3302371 (-) True CI01000047_03271413_03302291
CI01000047_03258353_03261127.mRNA mRNA downstream 409551 3258353 ~ 3261825 (-) True CI01000047_03258353_03261127
CI01000047_03689400_03699969.mRNA mRNA upstream 14758 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03713156_03716003.mRNA mRNA upstream 38514 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03741720_03750331.mRNA mRNA upstream 66428 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 110100 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03855710_03868781.mRNA mRNA upstream 180901 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
TU230047 other downstream 537724 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 537724 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 1955859 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2836905 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3149134 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 123161 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 538767 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 604266 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 899693 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1199737 4874379 ~ 4876734 (-) True G203286

Expression Profile