RNA id: TU230408


Basic Information

Item Value
RNA id TU230408
length 377
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G203012
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3720117 ~ 3720493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAATCACAAGCTGAAGTGTTGTAAAATACATTAATATGTATTTATCTGCCAGAATCTGGCAGTAAATTTTGGAAGATTTTTGTCAATTTCTGCAAAACTGACTTTTCAGGATAGGAGATGGACTAAAAATGAACTCCCACACCTTACTGCCAGATTCTGAAAGATGAATTCTTCAAACAGTGGTACAAGAGGATCATTAAAAACAACTTACCTATGATGCAGGATGACTTCTCAGTCCCGTTTTTCTTCGGAATATCCCGGACGAGCCCCCAGCTGGTGCTTGTCCTTCAAGAGTCACTCTCAATCCGTCTTTCTATGAAAGCCTATAAAAAAAAAACAGTATTCATGTATTGTATTTTACAACACTTCAGCTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230343 lncRNA downstream 31555 3687526 ~ 3688562 (-) True G202949
TU230328 lncRNA downstream 32814 3685788 ~ 3687303 (-) True G202942
TU230313 lncRNA downstream 44467 3675391 ~ 3675650 (-) True G202932
TU230312 lncRNA downstream 45475 3671376 ~ 3674642 (-) True G202931
TU230266 lncRNA downstream 94248 3625326 ~ 3625869 (-) True G202900
TU230405 lncRNA upstream 209 3720702 ~ 3721356 (-) True G203010
TU230346 lncRNA upstream 9469 3729962 ~ 3739740 (-) True G202952
TU230324 lncRNA upstream 31619 3752112 ~ 3752831 (-) True G202938
TU230339 lncRNA upstream 34294 3754787 ~ 3755783 (-) True G202946
TU230413 lncRNA upstream 35676 3756169 ~ 3756399 (-) True G203017
CI01000047_03713156_03716003.mRNA mRNA downstream 4114 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 20148 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 196872 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 283934 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03321589_03328761.mRNA mRNA downstream 391356 3319692 ~ 3328761 (-) True CI01000047_03321589_03328761
CI01000047_03741720_03750331.mRNA mRNA upstream 20577 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03785018_03800982.mRNA mRNA upstream 64249 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03855710_03868781.mRNA mRNA upstream 135050 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03873674_03934985.mRNA mRNA upstream 152966 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03947036_03979744.mRNA mRNA upstream 225813 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
TU230047 other downstream 586465 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 586465 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2004600 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2885646 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3197875 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 77310 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 492916 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 558415 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 853842 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1153886 4874379 ~ 4876734 (-) True G203286

Expression Profile