Item | Value |
---|---|
RNA id | TU230339 |
length | 977 |
lncRNA type | antisense_over |
GC content | 0.34 |
exon number | 2 |
gene id | G202946 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 3754787 ~ 3755783 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU230324 | lncRNA | downstream | 1956 | 3752112 ~ 3752831 (-) | True | G202938 |
TU230346 | lncRNA | downstream | 15047 | 3729962 ~ 3739740 (-) | True | G202952 |
TU230405 | lncRNA | downstream | 33431 | 3720702 ~ 3721356 (-) | True | G203010 |
TU230408 | lncRNA | downstream | 34294 | 3720117 ~ 3720493 (-) | True | G203012 |
TU230343 | lncRNA | downstream | 66225 | 3687526 ~ 3688562 (-) | True | G202949 |
TU230413 | lncRNA | upstream | 386 | 3756169 ~ 3756399 (-) | True | G203017 |
TU230418 | lncRNA | upstream | 10844 | 3766627 ~ 3830452 (-) | False | G203021 |
TU230417 | lncRNA | upstream | 11042 | 3766825 ~ 3830452 (-) | True | G203021 |
TU230420 | lncRNA | upstream | 18720 | 3774503 ~ 3838228 (-) | False | G203022 |
TU230421 | lncRNA | upstream | 18720 | 3774503 ~ 3774940 (-) | True | G203022 |
CI01000047_03741720_03750331.mRNA | mRNA | downstream | 4412 | 3741070 ~ 3750375 (-) | True | CI01000047_03741720_03750331 |
CI01000047_03713156_03716003.mRNA | mRNA | downstream | 38784 | 3713156 ~ 3716003 (-) | True | CI01000047_03713156_03716003 |
CI01000047_03689400_03699969.mRNA | mRNA | downstream | 54818 | 3689400 ~ 3699969 (-) | True | CI01000047_03689400_03699969 |
CI01000047_03514753_03523245.mRNA | mRNA | downstream | 231542 | 3514451 ~ 3523245 (-) | True | CI01000047_03514753_03523245 |
CI01000047_03412414_03435209.mRNA | mRNA | downstream | 318604 | 3412398 ~ 3436183 (-) | True | CI01000047_03412414_03435209 |
CI01000047_03785018_03800982.mRNA | mRNA | upstream | 28959 | 3784742 ~ 3801004 (-) | False | CI01000047_03785018_03800982 |
CI01000047_03855710_03868781.mRNA | mRNA | upstream | 99760 | 3855543 ~ 3869804 (-) | True | CI01000047_03855710_03868781 |
CI01000047_03873674_03934985.mRNA | mRNA | upstream | 117676 | 3873459 ~ 3935129 (-) | False | CI01000047_03873674_03934985 |
CI01000047_03947036_03979744.mRNA | mRNA | upstream | 190523 | 3946306 ~ 3980325 (-) | True | CI01000047_03947036_03979744 |
CI01000047_04022011_04032483.mRNA | mRNA | upstream | 265962 | 4021745 ~ 4032666 (-) | False | CI01000047_04022011_04032483 |
TU230047 | other | downstream | 621135 | 3132313 ~ 3133652 (-) | False | G202733 |
TU230052 | other | downstream | 621135 | 3132313 ~ 3133652 (-) | True | G202733 |
TU227734 | other | downstream | 2039270 | 1706068 ~ 1715517 (-) | True | CI01000047_01708628_01744282 |
TU227498 | other | downstream | 2920316 | 833941 ~ 834471 (-) | True | G200472 |
TU227419 | other | downstream | 3232545 | 519108 ~ 522242 (-) | True | CI01000047_00519408_00522108 |
TU230337 | other | upstream | 42020 | 3985342 ~ 3986402 (-) | True | G202944 |
TU230541 | other | upstream | 457626 | 4214294 ~ 4214430 (-) | True | G203128 |
TU230539 | other | upstream | 523125 | 4278908 ~ 4278976 (-) | True | G203126 |
TU230543 | other | upstream | 818552 | 4576786 ~ 4576965 (-) | True | G203130 |
TU230719 | other | upstream | 1118596 | 4874379 ~ 4876734 (-) | True | G203286 |