RNA id: TU230417


Basic Information

Item Value
RNA id TU230417
length 281
lncRNA type read_through
GC content 0.50
exon number 2
gene id G203021
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3766627 ~ 3830452 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCTTCAAAGCCGGTTTCTCCCCATCCAGTGGACCAGCAGGTGGTGCCGTTGTGAAAGACACTGTCATTAGCAGCCAGGCAGATTGGGCTGATGTAGCTGGTAAAGTTCACTGGCTCACTCAATCTCAGCAAGGCGATGTCATTGGTGAACTGATACGGGTCGTAGTCTGGATGTTTAATGATGGATTGGACTCCTCGACTGACCTCGTTTGGGTTAGAGACTGAAATGTTTTGGCTCTGTCTGCCCAGATAAACAGTCCAGTAACTGTCTGGGGGTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230413 lncRNA downstream 10426 3756169 ~ 3756399 (-) True G203017
TU230339 lncRNA downstream 11042 3754787 ~ 3755783 (-) True G202946
TU230324 lncRNA downstream 13994 3752112 ~ 3752831 (-) True G202938
TU230346 lncRNA downstream 27085 3729962 ~ 3739740 (-) True G202952
TU230405 lncRNA downstream 45469 3720702 ~ 3721356 (-) True G203010
TU230441 lncRNA upstream 34064 3864516 ~ 3907080 (-) True G203041
TU230442 lncRNA upstream 35711 3866163 ~ 3866531 (-) True G203042
TU230349 lncRNA upstream 45606 3876058 ~ 3877425 (-) True G202954
TU230381 lncRNA upstream 48631 3879083 ~ 3915968 (-) True G202986
TU230446 lncRNA upstream 50426 3880878 ~ 3910785 (-) True G203046
CI01000047_03741720_03750331.mRNA mRNA downstream 16450 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 50822 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 66856 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 243580 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 330642 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03855710_03868781.mRNA mRNA upstream 25091 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03873674_03934985.mRNA mRNA upstream 43007 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03947036_03979744.mRNA mRNA upstream 115854 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 191293 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 274971 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
TU230047 other downstream 633173 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 633173 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2051308 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2932354 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3244583 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 382957 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 448456 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 743883 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1043927 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2088056 5918508 ~ 5927344 (-) True G203840

Expression Profile