RNA id: TU230421


Basic Information

Item Value
RNA id TU230421
length 227
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G203022
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3774503 ~ 3838228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACTTGTGTCATATCCAGACTTAATAGGATATATGGCCGGGGAAATCGGACCATAATGCATGAGTGTGAATGACATGTTTTTGCCAGACACCAAAACCACTTGAAAGGTCGACTCTGTCCTCCTATGAAATCCATAGTACGGTACTTTATCCCACGTTGCAATGAAAACCCACGATGCAGAGAAGTTCAGGTTGGGGTAATATTGGTTTATGTCTCTAGAGGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230413 lncRNA downstream 18104 3756169 ~ 3756399 (-) True G203017
TU230339 lncRNA downstream 18720 3754787 ~ 3755783 (-) True G202946
TU230324 lncRNA downstream 21672 3752112 ~ 3752831 (-) True G202938
TU230346 lncRNA downstream 34763 3729962 ~ 3739740 (-) True G202952
TU230405 lncRNA downstream 53147 3720702 ~ 3721356 (-) True G203010
TU230424 lncRNA upstream 2389 3777329 ~ 3844054 (-) True G203025
TU230393 lncRNA upstream 21560 3796500 ~ 3905595 (-) True G202998
TU230433 lncRNA upstream 32414 3807354 ~ 3808077 (-) False G203033
TU230432 lncRNA upstream 32470 3807410 ~ 3808077 (-) True G203033
TU230441 lncRNA upstream 89576 3864516 ~ 3907080 (-) True G203041
CI01000047_03741720_03750331.mRNA mRNA downstream 24128 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 58500 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 74534 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 251258 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03412414_03435209.mRNA mRNA downstream 338320 3412398 ~ 3436183 (-) True CI01000047_03412414_03435209
CI01000047_03785018_03800982.mRNA mRNA upstream 9802 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03855710_03868781.mRNA mRNA upstream 80603 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03873674_03934985.mRNA mRNA upstream 98519 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03947036_03979744.mRNA mRNA upstream 171366 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 246805 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
TU230047 other downstream 640851 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 640851 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2058986 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 2940032 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3252261 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230337 other upstream 22863 3985342 ~ 3986402 (-) True G202944
TU230541 other upstream 438469 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 503968 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 799395 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 1099439 4874379 ~ 4876734 (-) True G203286