RNA id: TU230441


Basic Information

Item Value
RNA id TU230441
length 223
lncRNA type read_through
GC content 0.33
exon number 2
gene id G203041
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3864516 ~ 3907080 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACAGGATGTTTAGTGAGGGCTGAGGAGCACATCCTAACTAAGATGATGGATAAAACAAATAATAAAAAAACCTGATGTGTCTGAGCAAACATGCAAAAAGTACACAAAATTAAATGCATGAATGAATGGATACACATACTACTACAAGTCTTTTGCTTTTTTGAGTGTGAAATAAAGGTTTTACAGCACTTAATAACTTGAAGAAGGTTTCAAAGACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230424 lncRNA downstream 20462 3777329 ~ 3844054 (-) True G203025
TU230420 lncRNA downstream 26288 3774503 ~ 3838228 (-) False G203022
TU230418 lncRNA downstream 34064 3766627 ~ 3830452 (-) False G203021
TU230417 lncRNA downstream 34064 3766825 ~ 3830452 (-) True G203021
TU230433 lncRNA downstream 56439 3807354 ~ 3808077 (-) False G203033
TU230461 lncRNA upstream 42536 3949616 ~ 3955274 (-) True G203059
TU230470 lncRNA upstream 97553 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 107993 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 137630 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 168839 4075919 ~ 4080229 (-) False G202934
CI01000047_03785018_03800982.mRNA mRNA downstream 63512 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 114141 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 148513 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 164547 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03514753_03523245.mRNA mRNA downstream 341271 3514451 ~ 3523245 (-) True CI01000047_03514753_03523245
CI01000047_03947036_03979744.mRNA mRNA upstream 39226 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 114665 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 198343 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 220822 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 230519 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
TU230047 other downstream 730864 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 730864 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2148999 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3030045 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3342274 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 306329 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 371828 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 667255 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 967299 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2011428 5918508 ~ 5927344 (-) True G203840

Expression Profile