RNA id: TU230452


Basic Information

Item Value
RNA id TU230452
length 582
lncRNA type intronic
GC content 0.37
exon number 2
gene id G203051
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3905622 ~ 3906224 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTAGCACTTCCAGGTTCTACGTCACCGACTCAGTATTGGCCAAAGCTGATCACGTGAGCAGCACGACGCAAGCCGGCCAATAATGAGCCGACATTCTGATGTAGAGCACAGAAGCGTTGCACTGTCTGCAATGCAAACAGCGTAGGAGAATGACAGGGGAGATACGAATTTGTTGTATAAAGTCATTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCACTGCAGTCACATGGATTTTAACAATGTCTTTACTACTTTTCTGGACCTATAATGACAGTAATTATGTTGCTTTCTATGGGGAATAAAAAAAAAAATCTTGGATTTCAAGAAAAATTTGTGTTCTGAAGATGAACGAAGGTCTTACAGGTTTGGAACAACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAATAGAAGAAAGAAAGCCATACAATTTTGGAACGACATGGCGGTGAGTAAAAGATGACATAATTAACTTTTTTTTTGTGATCTATCCACTTTATTAATAAAAATCATTAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230393 lncRNA downstream 27 3796500 ~ 3905595 (-) True G202998
TU230349 lncRNA downstream 8444 3876058 ~ 3877425 (-) True G202954
TU230442 lncRNA downstream 39091 3866163 ~ 3866531 (-) True G203042
TU230424 lncRNA downstream 61568 3777329 ~ 3844054 (-) True G203025
TU230420 lncRNA downstream 67394 3774503 ~ 3838228 (-) False G203022
TU230461 lncRNA upstream 43392 3949616 ~ 3955274 (-) True G203059
TU230470 lncRNA upstream 98409 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 108849 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 138486 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 169695 4075919 ~ 4080229 (-) False G202934
CI01000047_03855710_03868781.mRNA mRNA downstream 35818 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 104618 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 155247 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 189619 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_03689400_03699969.mRNA mRNA downstream 205653 3689400 ~ 3699969 (-) True CI01000047_03689400_03699969
CI01000047_03947036_03979744.mRNA mRNA upstream 40082 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_04022011_04032483.mRNA mRNA upstream 115521 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 199199 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 221678 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 231375 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
TU230047 other downstream 771970 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 771970 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2190105 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3071151 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3383380 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 307185 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 372684 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 668111 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 968155 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 2012284 5918508 ~ 5927344 (-) True G203840

Expression Profile