RNA id: TU228671


Basic Information

Item Value
RNA id TU228671
length 241
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G201508
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3907414 ~ 3931682 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGTATCACGGTCTATAAAACTGTTGATCATTTCTATAACAAAATCCTTCATCTTAATAAACTCCAGAGGTTTTACACTTCCAGATCCATCCAGTAAAAAAGCAATATCAATTTGTGATATTGGGCATTCTGAGGTTGGAGAAATGAAAAATTGCATCATATTTTCATTTAATCTGAATAATCATGTCATACAGTATATACAGTATGAAGAAGACTTGCTTTGATTTGGTAGAATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228634 lncRNA upstream 112624 3794286 ~ 3794790 (+) True G201475
TU228618 lncRNA upstream 150739 3756466 ~ 3756675 (+) True G201462
TU228617 lncRNA upstream 165548 3741053 ~ 3741866 (+) True G201461
TU228583 lncRNA upstream 187640 3715514 ~ 3719774 (+) True G201428
TU228534 lncRNA upstream 211064 3693528 ~ 3696350 (+) True G201386
TU228683 lncRNA downstream 64777 3996459 ~ 3997356 (+) True G201520
TU228691 lncRNA downstream 131327 4063009 ~ 4064822 (+) True G201526
TU228718 lncRNA downstream 240977 4172659 ~ 4174658 (+) True G201549
TU228728 lncRNA downstream 355097 4286779 ~ 4349774 (+) True G201555
TU228754 lncRNA downstream 370892 4302574 ~ 4305252 (+) True G201581
CI01000047_03823906_03854710.mRNA mRNA upstream 52600 3822146 ~ 3854814 (+) True CI01000047_03823906_03854710
CI01000047_03778996_03783444.mRNA mRNA upstream 123970 3778996 ~ 3783444 (+) True CI01000047_03778996_03783444
CI01000047_03771908_03778580.mRNA mRNA upstream 128834 3771908 ~ 3778580 (+) True CI01000047_03771908_03778580
CI01000047_03760606_03768136.mRNA mRNA upstream 139278 3760606 ~ 3768136 (+) True CI01000047_03760606_03768136
CI01000047_03752293_03755079.mRNA mRNA upstream 152255 3750931 ~ 3755159 (+) True CI01000047_03752293_03755079
CI01000047_04012371_04020979.mRNA mRNA downstream 80642 4012324 ~ 4021255 (+) True CI01000047_04012371_04020979
CI01000047_04040223_04054395.mRNA mRNA downstream 108438 4040120 ~ 4054395 (+) True CI01000047_04040223_04054395
CI01000047_04056077_04061495.mRNA mRNA downstream 124395 4056077 ~ 4061495 (+) True CI01000047_04056077_04061495
CI01000047_04065102_04071608.mRNA mRNA downstream 133420 4065102 ~ 4072324 (+) True CI01000047_04065102_04071608
CI01000047_04075849_04088601.mRNA mRNA downstream 144167 4075849 ~ 4088917 (+) True CI01000047_04075849_04088601
TU228535 other upstream 205554 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 819227 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1329417 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 1588452 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 2154577 1751469 ~ 1752837 (+) True G199784
TU228781 other downstream 484131 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 2884035 6815717 ~ 6816118 (+) True G202382

Expression Profile