RNA id: TU230461


Basic Information

Item Value
RNA id TU230461
length 326
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G203059
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3949616 ~ 3955274 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAACGCCGACGCCCCCTGTGAATGCAGCGTAAGAGCTTTTGTGCGAAAAGGTGCGTTTGCAAAATATGCTCTATTTTTGTAAGTCTGCTAGGTGCCGCTAGTGTCACGCGTTGCCGAACTGAAATTGTGGATTCCGTCGTGTTGCTTCACTCACGTTGCTCTTGGCAGAAGTTGAACATTTCTCAACTTTTTAGCCAATCAGATCGCCTTATGCAAATAGCCTAGAGCAGTTGTTAGCCAATTACGCTCATGCAACGGTCATGCAAGTAATGAGATTGGTTGTTGTCACTACGACGGTCGCGTCAGCGTTAACGCTTGATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230381 lncRNA downstream 33648 3879083 ~ 3915968 (-) True G202986
TU230446 lncRNA downstream 38831 3880878 ~ 3910785 (-) True G203046
TU230441 lncRNA downstream 42536 3864516 ~ 3907080 (-) True G203041
TU230452 lncRNA downstream 43392 3905622 ~ 3906224 (-) True G203051
TU230393 lncRNA downstream 44021 3796500 ~ 3905595 (-) True G202998
TU230470 lncRNA upstream 49359 4004633 ~ 4075704 (-) True G203067
TU230321 lncRNA upstream 59799 4015073 ~ 4018863 (-) True G202935
TU230354 lncRNA upstream 89436 4044710 ~ 4052438 (-) True G202959
TU230316 lncRNA upstream 120645 4075919 ~ 4080229 (-) False G202934
TU230318 lncRNA upstream 120645 4075919 ~ 4086107 (-) True G202934
CI01000047_03873674_03934985.mRNA mRNA downstream 14487 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 79812 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 148612 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_03741720_03750331.mRNA mRNA downstream 199241 3741070 ~ 3750375 (-) True CI01000047_03741720_03750331
CI01000047_03713156_03716003.mRNA mRNA downstream 233613 3713156 ~ 3716003 (-) True CI01000047_03713156_03716003
CI01000047_04022011_04032483.mRNA mRNA upstream 66471 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04105620_04111019.mRNA mRNA upstream 150149 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 172628 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 182325 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04213574_04213976.mRNA mRNA upstream 258147 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
TU230047 other downstream 815964 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 815964 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2234099 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3115145 833941 ~ 834471 (-) True G200472
TU227419 other downstream 3427374 519108 ~ 522242 (-) True CI01000047_00519408_00522108
TU230541 other upstream 258135 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 323634 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 619061 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 919105 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1963234 5918508 ~ 5927344 (-) True G203840

Expression Profile