RNA id: TU230316



Basic Information


Item Value
RNA id TU230316
length 1130
lncRNA type antisense_over
GC content 0.49
exon number 8
gene id G202934
representative False

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4075919 ~ 4086107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAACCTTGCCGTCCACATAAAAAGGTCAAAGTATATGATTTTTTTTTATATACTGTATGATTATCACTAATCTGGACACTGTCACAAGGGTCTAGCAGCTGCACTCATCAATAGACTGATGATGTTTTCATACCTGTCTGTTCCTTTCTTTCCTCTGGCCTGCAGGATCTCGCTGAGTTTCTTGATCACCACAGCAGTATTGATCTCCGTGCCTTTGGCGAACATCTTGGGCTTCTCCTTCACAAGCGGCACGCCACCCTTCACCTTCTCCCATCCTCCTTCCTCTGCTTCTCCCTCTTCTTCACCCTCCTCCTCTGTTGGCTTCTTCTTGTGTCTCCTCTTTCTGTCTTCCTTTTTGTCGTCCCTCCTGCGGTCGGACTGCTTGTCGCCGTCTTGAGTTCTTTTTGAGGAAAACCACAGCCAGTGATGCTGCAGTTCCTTCATTGTCTTCACTCTCACTGCCGCTGCCCACTGAATCAGAGCTCCAATGTTCACTCTCATCATCATCACTACTCTCGGACTCTTCATCAGCAGCGCCCTTGAGGAACTTGCTGGCCTCTGGTGCCGCCTTCTCCTCTTCTTGAGGCTTCTTCTTCATAAAGCTCTTGGCAGTGACACCATCATCATCATCACTCTCCGAGGATGACCCACTGCCAATGTCATCCTTCTCCTCCTCTTCTTCAGCTGACTGCTCAGGGTTCTCTTTATAGCTGGCAATCTCGGTTTCAAAGTCCCTGTTGTATTTGCGGATCTTCTGGCGCAGTGTGCTCAAGGCTTTCGCATTGTTTTTGTTCATCTTCTTCTTCCCCTCCTTGTCCTCCCATAGCTGGTTGAGATAGTCCTCCAGATCAGCTAGCAGGCGAATGTAGAACTGCGGCACACCCTCTTTGTCCACGATGGCTTTGCTTTTGATGAACGCTCGACACAACTGCTCAAATTCCTCCAGACATTTGGATATGTCTCGGATCTTCATGGCATTGCGGATCGTCTTGATAAAGTTGGTGAGCTCCTCAAACCTCTTGTCCTTGGCACTGCGTACCACTCTTTTGGTGTCCTCCTCATCATCACTCAGCAACAGGGCCTGCTTATTGAAAGTAGTCCCGGTCGCTTTGGGGGTGATCTCATCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230470 lncRNA downstream 215 4004633 ~ 4075704 (-) True G203067
TU230354 lncRNA downstream 23481 4044710 ~ 4052438 (-) True G202959
TU230321 lncRNA downstream 53510 4015073 ~ 4018863 (-) True G202935
TU230461 lncRNA downstream 120645 3949616 ~ 3955274 (-) True G203059
TU230381 lncRNA downstream 159951 3879083 ~ 3915968 (-) True G202986
TU230490 lncRNA upstream 11480 4091709 ~ 4091935 (-) True G203082
TU230492 lncRNA upstream 12949 4093178 ~ 4093411 (-) True G203084
TU230493 lncRNA upstream 13190 4093419 ~ 4093621 (-) True G203085
TU230392 lncRNA upstream 14126 4094355 ~ 4094892 (-) True G202997
TU230386 lncRNA upstream 50483 4130712 ~ 4176770 (-) True G202991
CI01000047_04022011_04032483.mRNA mRNA downstream 43253 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_03947036_03979744.mRNA mRNA downstream 95594 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_03873674_03934985.mRNA mRNA downstream 140790 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 206115 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 274915 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_04105620_04111019.mRNA mRNA upstream 25194 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 47673 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 57370 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04213574_04213976.mRNA mRNA upstream 133192 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04285605_04286644.mRNA mRNA upstream 204998 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
TU230337 other downstream 89517 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 942267 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 942267 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2360402 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3241448 833941 ~ 834471 (-) True G200472
TU230541 other upstream 133180 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 198679 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 494106 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 794150 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1838279 5918508 ~ 5927344 (-) True G203840

Expression Profile