RNA id: TU230392


Basic Information

Item Value
RNA id TU230392
length 538
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G202997
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4094355 ~ 4094892 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTGTGCGCTTAATAAACAGAATGTTGTGTGTTGGTGTGGACGTTAAAATTGTTATTCTTGATGTTAATGGGCTTTTATTGTATAATTCTGACATAAAAAGTAGAAATCATGACAGTCGAAAATGTTACTAAATCATAATTATGACATCCTAAGTCAATTAAGACAAAAATCATTGCTTTAAGACATGTCATAATTACGATACGACAACGCATGACCTTCTACTCAGAGCTGTTCACAGACTTGGACTGAGAATTATGCATTTCTATGGCAACACTAAATTAATCTGCAGAAGTCACATGGTACAAGTAAAATTCCCAGGTTACAAGTTGTAATTACAAGTTCGACGAAGACATGAACTCTTTTTACAAACCCGATTCCAAAAAAGTTGGGACACTACAAATTGTGAATAAAAAAGGAATGCAATGATGTGGAAGTTTCAAATTTCAATATTTTATTCAGAATACAACATAGATGACATATCAAATGTTTAAACTGAGAAAATGTATCATTTTAAGGGAAAAATAAGTTGATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230493 lncRNA downstream 734 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 944 4093178 ~ 4093411 (-) True G203084
TU230490 lncRNA downstream 2420 4091709 ~ 4091935 (-) True G203082
TU230318 lncRNA downstream 8248 4075919 ~ 4086107 (-) True G202934
TU230316 lncRNA downstream 14126 4075919 ~ 4080229 (-) False G202934
TU230386 lncRNA upstream 35820 4130712 ~ 4176770 (-) True G202991
TU230556 lncRNA upstream 124505 4219397 ~ 4219733 (-) True G203143
TU230606 lncRNA upstream 313581 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 313649 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 313649 4408541 ~ 4408827 (-) True G203189
CI01000047_04022011_04032483.mRNA mRNA downstream 61689 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_03947036_03979744.mRNA mRNA downstream 114030 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_03873674_03934985.mRNA mRNA downstream 159226 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 224551 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_03785018_03800982.mRNA mRNA downstream 293351 3784742 ~ 3801004 (-) False CI01000047_03785018_03800982
CI01000047_04105620_04111019.mRNA mRNA upstream 10531 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04128025_04134725.mRNA mRNA upstream 33010 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04137872_04142531.mRNA mRNA upstream 42707 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04213574_04213976.mRNA mRNA upstream 118529 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04285605_04286644.mRNA mRNA upstream 190335 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
TU230337 other downstream 107953 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 960703 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 960703 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2378838 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3259884 833941 ~ 834471 (-) True G200472
TU230541 other upstream 118517 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 184016 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 479443 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 779487 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1823616 5918508 ~ 5927344 (-) True G203840

Expression Profile