RNA id: TU230386



Basic Information


Item Value
RNA id TU230386
length 1798
lncRNA type read_through
GC content 0.40
exon number 2
gene id G202991
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4130712 ~ 4176770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACATCCCAAAAATGAATTAACGGAAAAGGACATTGCATATTTTTGTACAATTTCAATACTGTTCAGTTACCACTTGAGTCGCAACCAGTTGAGAACCACTGCCTTACAGCTTCCATTTGTCTACCAACATGGCTGTGAATGAGTGCAGTCAGCCTTTACCCTTTGTTCCAGCAGGGCTCTGCGGATGGACACTCTCTGCTCCAGGTCTTTAACCTCCCTCTCATGCTGAGTGTCAGTATGCATCTTGATTTTACTCTGGTAGGCATTAAGCAGCTCCAACTCCTGCTGCAGCTGCATCCTCAGCACCTGATACTCCGCTTCCTGCGTCTCATCCAATCGCAGCTGGAGTGAAACAGCACAAAATGGCAAAGGTCAATAAGGCAGGGGTAACTCTGATGCTGGAGTCTGGCTGCTGGGATCAGATGTAGGGTGATATACCTTACCATGTACTGTTTTGAGAGTATGTCACTGATGGTGTAGGTTTGAGTGAGGGTTTTGGTGGTCAGTGGGATGGAATTGTGATTCATGTGTCCTTGCCTTACTCACAGCCTGTGTGGACAGCATGTCGTTGATCGAGTGGTCGTATTGCTCAGCCAGAATAGCCAGCTTACGAGTCTGCTCATCTTTAAGACGCTTCAGCACGGCCTTGTGGTCCGACTTCGGTGTGTTCTCCAGCAGATGGTTCCTCAGAGCTTTATACTGACGTGTTTGGATCTTACACGTGTCTTGGAACTGACGCTTAATCTGCAGCTCTTTGGACTACAGGAACAGGGAAGAGCGTTGTAACAAGGATTGACAACAGACAGATAAGAAAGAGTGGAGGGGGAAAGAAGTGTCACAGCACGAATGTGCTGTCATTGGTTATAAAACACTTTAAAACAATGTCATTTATTTGTAGTATGTAGAATCATATTGTGGGACACATGAAGTAGCACAAATAATTTTGAGCAGAAATCTATAAAAAAATAAATAAATAAAAAAAATATTCAGAAAAGATGCATTAAATTGATTAAAAGAGACAGTAAAGACATTTATGATGCAAATAAATACTGTTCTTTTGAACTTAATATACATCAAAGAATACTGAAAAATGTATCACAGTTTCCACAAAAATTTTAATCAGCACAACTCTAAAAATTCATCACTGATAATAATAAAAAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGAACATGTGACACTGAAAGGATTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTCTTGATAAAATCAGATGGCTCAATAAGGCCTGCATCGCCAGCAAAAACACTCCCTTTTTCAGTGCATAGAAAGGTACTAAAAACATATTTAAAACTGTTCATGTGAGTACAGTGGTTCAACCTTAATGTTATAAAGCGTCGAGAATACTTTTTGTGCGCCAAAAATAACAAAATAGTGACTTTATTCAACAATATCTAGTGATGGGCAATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTGGTTCAGAGCGCCAAAGTCACATGATTTCAGTAAACGAGGCTTTGTTACGTCATAAGTGTTTTGAAACTTCAATGGTTCGCGTGACTTTGGCAGTTTGATTCATGCTCCGAACCACTGGCATTGAAAATATGTTTTTAGTAGCTTTCTGGGCATTGAAAAAAGGAGTGTTCTTGCTGGTGATGCAGGCCTCACTGAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230392 lncRNA downstream 35820 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 37091 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 37301 4093178 ~ 4093411 (-) True G203084
TU230490 lncRNA downstream 38777 4091709 ~ 4091935 (-) True G203082
TU230318 lncRNA downstream 44605 4075919 ~ 4086107 (-) True G202934
TU230556 lncRNA upstream 42627 4219397 ~ 4219733 (-) True G203143
TU230606 lncRNA upstream 231703 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 231771 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 231771 4408541 ~ 4408827 (-) True G203189
TU230610 lncRNA upstream 243389 4420159 ~ 4425359 (-) True G203191
CI01000047_04105620_04111019.mRNA mRNA downstream 19528 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04022011_04032483.mRNA mRNA downstream 98046 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_03947036_03979744.mRNA mRNA downstream 150387 3946306 ~ 3980325 (-) True CI01000047_03947036_03979744
CI01000047_03873674_03934985.mRNA mRNA downstream 195583 3873459 ~ 3935129 (-) False CI01000047_03873674_03934985
CI01000047_03855710_03868781.mRNA mRNA downstream 260908 3855543 ~ 3869804 (-) True CI01000047_03855710_03868781
CI01000047_04213574_04213976.mRNA mRNA upstream 36651 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04285605_04286644.mRNA mRNA upstream 108457 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04289186_04338565.mRNA mRNA upstream 112293 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04345335_04375341.mRNA mRNA upstream 168357 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04385029_04397861.mRNA mRNA upstream 207777 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
TU230337 other downstream 144310 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 997060 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 997060 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2415195 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU227498 other downstream 3296241 833941 ~ 834471 (-) True G200472
TU230541 other upstream 36639 4214294 ~ 4214430 (-) True G203128
TU230539 other upstream 102138 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 397565 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 697609 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1741738 5918508 ~ 5927344 (-) True G203840

Expression Profile