RNA id: TU230556


Basic Information

Item Value
RNA id TU230556
length 337
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G203143
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4219397 ~ 4219733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCACTTGCTGCCTAATATATCCCACCCACTAACAGGAGCCGTGATGAAGAGATAATCAGTGTTATTCACTTCACCTGTCAGTGCTCATAATGTTATGCCTGATCGGTGTATGTCATCTGGATTACATAATCAGATTCCAAAGATTAAATACTTGTAATGAGATTATAATACTTTTTAAAATACTCATAATCAGAATACAGTTACTTTTTTATTGATTACATGATTACTTAATATTCACAAAATGGCACTAAATTATTCAGAATTCATTGATTCTCCCTAATTCTTCTTTTTTATCTTTTACATTTTCTTTTCTCACAGGTTTTATAGAATTGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230386 lncRNA downstream 42627 4130712 ~ 4176770 (-) True G202991
TU230392 lncRNA downstream 124505 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 125776 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 125986 4093178 ~ 4093411 (-) True G203084
TU230490 lncRNA downstream 127462 4091709 ~ 4091935 (-) True G203082
TU230606 lncRNA upstream 188740 4408473 ~ 4408765 (-) False G203189
TU230605 lncRNA upstream 188808 4408541 ~ 4408765 (-) False G203189
TU230607 lncRNA upstream 188808 4408541 ~ 4408827 (-) True G203189
TU230610 lncRNA upstream 200426 4420159 ~ 4425359 (-) True G203191
TU230623 lncRNA upstream 282472 4502205 ~ 4502522 (-) True G203204
CI01000047_04213574_04213976.mRNA mRNA downstream 5421 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04137872_04142531.mRNA mRNA downstream 76866 4137599 ~ 4142531 (-) True CI01000047_04137872_04142531
CI01000047_04128025_04134725.mRNA mRNA downstream 84672 4127902 ~ 4134725 (-) True CI01000047_04128025_04134725
CI01000047_04105620_04111019.mRNA mRNA downstream 108213 4105423 ~ 4111184 (-) True CI01000047_04105620_04111019
CI01000047_04022011_04032483.mRNA mRNA downstream 186731 4021745 ~ 4032666 (-) False CI01000047_04022011_04032483
CI01000047_04285605_04286644.mRNA mRNA upstream 65494 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04289186_04338565.mRNA mRNA upstream 69330 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04345335_04375341.mRNA mRNA upstream 125394 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04385029_04397861.mRNA mRNA upstream 164814 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
CI01000047_04398951_04431817.mRNA mRNA upstream 179218 4398951 ~ 4431817 (-) True CI01000047_04398951_04431817
TU230541 other downstream 4967 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 232995 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1085745 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 1085745 3132313 ~ 3133652 (-) True G202733
TU227734 other downstream 2503880 1706068 ~ 1715517 (-) True CI01000047_01708628_01744282
TU230539 other upstream 59175 4278908 ~ 4278976 (-) True G203126
TU230543 other upstream 354602 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 654646 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1698775 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1823520 6043253 ~ 6043789 (-) True G203881

Expression Profile