RNA id: TU228754


Basic Information

Item Value
RNA id TU228754
length 227
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G201581
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4302574 ~ 4305252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTTTCTTTCATGTTATATTTCATGGCTATTTATCATATTCTTTGTATTAAACAGTGATGTTAACTTCCTTAGACCCACCATCAACACGAAATACCCATCGTCCCGTCACATTGACATTGCTGGAGTTGGACAGCTTATTTGCATCAGGCGCAGGGATTGAAAAATAATTTGTTGAGTCTATTGTGTCGTAGCCAGCCTGAGTAAACAAAAAGTAATCATCATCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228718 lncRNA upstream 120125 4172659 ~ 4174658 (+) True G201549
TU228691 lncRNA upstream 237752 4063009 ~ 4064822 (+) True G201526
TU228683 lncRNA upstream 305218 3996459 ~ 3997356 (+) True G201520
TU228672 lncRNA upstream 370676 3907608 ~ 3931898 (+) True G201509
TU228671 lncRNA upstream 370892 3907414 ~ 3931682 (+) True G201508
TU228795 lncRNA downstream 103266 4408518 ~ 4408772 (+) True G201609
TU228799 lncRNA downstream 114932 4420184 ~ 4425415 (+) True G201613
TU228773 lncRNA downstream 173099 4478351 ~ 4480778 (+) True G201599
TU228830 lncRNA downstream 235047 4540299 ~ 4540501 (+) True G201639
TU228832 lncRNA downstream 240641 4545893 ~ 4546137 (+) True G201641
CI01000047_04222867_04253291.mRNA mRNA upstream 48863 4222682 ~ 4253711 (+) True CI01000047_04222867_04253291
CI01000047_04214987_04217836.mRNA mRNA upstream 84097 4214987 ~ 4218477 (+) True CI01000047_04214987_04217836
CI01000047_04198702_04207295.mRNA mRNA upstream 95169 4198702 ~ 4207405 (+) True CI01000047_04198702_04207295
CI01000047_04183386_04192887.mRNA mRNA upstream 109548 4183386 ~ 4193026 (+) True CI01000047_04183386_04192887
CI01000047_04153298_04179343.mRNA mRNA upstream 121708 4153298 ~ 4180866 (+) False CI01000047_04153298_04179343
CI01000047_04471595_04476690.mRNA mRNA downstream 165873 4471125 ~ 4477217 (+) True CI01000047_04471595_04476690
CI01000047_04582184_04586359.mRNA mRNA downstream 276752 4582004 ~ 4586796 (+) True CI01000047_04582184_04586359
CI01000047_04606043_04610846.mRNA mRNA downstream 300791 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_04663268_04663847.mRNA mRNA downstream 357063 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_04678392_04690824.mRNA mRNA downstream 372740 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
TU228535 other upstream 600714 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1214387 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1724577 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 1983612 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 2549737 1751469 ~ 1752837 (+) True G199784
TU228781 other downstream 110561 4415813 ~ 4482457 (+) False G201599
TU229634 other downstream 2510465 6815717 ~ 6816118 (+) True G202382

Expression Profile