RNA id: TU230606


Basic Information

Item Value
RNA id TU230606
length 293
lncRNA type intronic
GC content 0.38
exon number 1
gene id G203189
representative False

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4408473 ~ 4408827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAAGCATACCCAGAACAAAGAACTCTAGCTTCTGTTGTCTTCAGCAAGCGCTCTGTGTTATCGTGTGTCTTATTTGGTGTTGTTTGTCTTATTACATAAACAAGTCACAATCTCTTCATCTGAGGACAAGAGTATCTCACACCAATCCATATATTTATATATAAAAATGACACGTATTATGGCGAAAAACAGCAGTTGAATGGGAGTTGAGCATGCCCAGGCAGCTCTTGAGGGAGCTGTCTGTGTGCACTGTAAAAAAAAAAATAAAAAAAACTCACTCTCAGGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230556 lncRNA downstream 188740 4219397 ~ 4219733 (-) True G203143
TU230386 lncRNA downstream 231703 4130712 ~ 4176770 (-) True G202991
TU230392 lncRNA downstream 313581 4094355 ~ 4094892 (-) True G202997
TU230493 lncRNA downstream 314852 4093419 ~ 4093621 (-) True G203085
TU230492 lncRNA downstream 315062 4093178 ~ 4093411 (-) True G203084
TU230610 lncRNA upstream 11394 4420159 ~ 4425359 (-) True G203191
TU230623 lncRNA upstream 93440 4502205 ~ 4502522 (-) True G203204
TU230636 lncRNA upstream 127576 4536341 ~ 4536570 (-) True G203217
TU230641 lncRNA upstream 136804 4545569 ~ 4546132 (-) False G203219
TU230638 lncRNA upstream 136971 4545736 ~ 4546132 (-) False G203219
CI01000047_04385029_04397861.mRNA mRNA downstream 10612 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
CI01000047_04345335_04375341.mRNA mRNA downstream 33039 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04289186_04338565.mRNA mRNA downstream 68703 4289063 ~ 4339770 (-) True CI01000047_04289186_04338565
CI01000047_04285605_04286644.mRNA mRNA downstream 121779 4285227 ~ 4286694 (-) False CI01000047_04285605_04286644
CI01000047_04213574_04213976.mRNA mRNA downstream 194497 4213421 ~ 4213976 (-) False CI01000047_04213574_04213976
CI01000047_04458864_04461672.mRNA mRNA upstream 50006 4458771 ~ 4462094 (-) True CI01000047_04458864_04461672
CI01000047_04479638_04501854.mRNA mRNA upstream 70476 4479241 ~ 4501973 (-) True CI01000047_04479638_04501854
CI01000047_04555399_04568166.mRNA mRNA upstream 146057 4554822 ~ 4568320 (-) True CI01000047_04555399_04568166
CI01000047_04575184_04576337.mRNA mRNA upstream 166226 4574991 ~ 4576337 (-) False CI01000047_04575184_04576337
CI01000047_04589853_04594533.mRNA mRNA upstream 181005 4589770 ~ 4594636 (-) True CI01000047_04589853_04594533
TU230539 other downstream 121792 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 194043 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 422071 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1274821 3132313 ~ 3133652 (-) False G202733
TU230052 other downstream 1274821 3132313 ~ 3133652 (-) True G202733
TU230543 other upstream 165570 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 465614 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1509743 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1634488 6043253 ~ 6043789 (-) True G203881

Expression Profile