Item | Value |
---|---|
RNA id | TU228773 |
length | 1776 |
lncRNA type | antisense_over |
GC content | 0.41 |
exon number | 2 |
gene id | G201599 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 4415813 ~ 4482457 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU228799 | lncRNA | upstream | 52936 | 4420184 ~ 4425415 (+) | True | G201613 |
TU228795 | lncRNA | upstream | 69579 | 4408518 ~ 4408772 (+) | True | G201609 |
TU228728 | lncRNA | upstream | 128577 | 4286779 ~ 4349774 (+) | True | G201555 |
TU228754 | lncRNA | upstream | 173099 | 4302574 ~ 4305252 (+) | True | G201581 |
TU228718 | lncRNA | upstream | 295902 | 4172659 ~ 4174658 (+) | True | G201549 |
TU228830 | lncRNA | downstream | 59521 | 4540299 ~ 4540501 (+) | True | G201639 |
TU228832 | lncRNA | downstream | 65115 | 4545893 ~ 4546137 (+) | True | G201641 |
TU228833 | lncRNA | downstream | 66474 | 4547252 ~ 4547455 (+) | True | G201642 |
TU228786 | lncRNA | downstream | 92590 | 4573368 ~ 4596630 (+) | True | G201600 |
TU228793 | lncRNA | downstream | 93557 | 4574335 ~ 4576940 (+) | True | G201607 |
CI01000047_04471595_04476690.mRNA | mRNA | upstream | 1134 | 4471125 ~ 4477217 (+) | True | CI01000047_04471595_04476690 |
CI01000047_04222867_04253291.mRNA | mRNA | upstream | 224640 | 4222682 ~ 4253711 (+) | True | CI01000047_04222867_04253291 |
CI01000047_04214987_04217836.mRNA | mRNA | upstream | 259874 | 4214987 ~ 4218477 (+) | True | CI01000047_04214987_04217836 |
CI01000047_04198702_04207295.mRNA | mRNA | upstream | 270946 | 4198702 ~ 4207405 (+) | True | CI01000047_04198702_04207295 |
CI01000047_04183386_04192887.mRNA | mRNA | upstream | 285325 | 4183386 ~ 4193026 (+) | True | CI01000047_04183386_04192887 |
CI01000047_04582184_04586359.mRNA | mRNA | downstream | 101226 | 4582004 ~ 4586796 (+) | True | CI01000047_04582184_04586359 |
CI01000047_04606043_04610846.mRNA | mRNA | downstream | 125265 | 4606043 ~ 4611322 (+) | True | CI01000047_04606043_04610846 |
CI01000047_04663268_04663847.mRNA | mRNA | downstream | 181537 | 4662315 ~ 4663996 (+) | True | CI01000047_04663268_04663847 |
CI01000047_04678392_04690824.mRNA | mRNA | downstream | 197214 | 4677992 ~ 4691097 (+) | True | CI01000047_04678392_04690824 |
CI01000047_04826817_04834995.mRNA | mRNA | downstream | 346039 | 4826817 ~ 4835216 (+) | True | CI01000047_04826817_04834995 |
TU228535 | other | upstream | 776491 | 3696516 ~ 3701860 (+) | True | G201387 |
TU228278 | other | upstream | 1390164 | 3018705 ~ 3088187 (+) | True | G201186 |
TU227053 | other | upstream | 1900354 | 2520596 ~ 2577997 (+) | True | G200076 |
TU226970 | other | upstream | 2159389 | 2316863 ~ 2318962 (+) | True | G200003 |
TU226744 | other | upstream | 2725514 | 1751469 ~ 1752837 (+) | True | G199784 |
TU229634 | other | downstream | 2334939 | 6815717 ~ 6816118 (+) | True | G202382 |