RNA id: TU228773



Basic Information


Item Value
RNA id TU228773
length 1776
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G201599
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4415813 ~ 4482457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGAAAGCATCGTCGTTTGTTTAATTCATGCTTAGAGAAAGGCACTGAGGCCATGGCAAGAAGATAACATATCCAGCATCCAGTTGACCACATAAACATGCTTTATTTCAACATCCAAAATAATTAAAAACATCTTGAAATACTATACATGTACAAAATAAGTACAGATCCTTTGTTGGAACCATTGAAGGGTTTATTTCTTCTGTTTTTCTTTTTGCCGCCTCATTTCAGTTTTTATAAGAAACCTTTCACTGAAAACAAATCAAACAAACGAAAAAACAAAAAAAATAAAATGGAAAAGAGATGTGCATTGCATTTTGAGAGTAGAAATAAAATCTGGAAACGGGGGGAGCGGCATGTACAGACAAAAATAAGACTTCTCTAGAAACTTCAGGAAGGGGGAATTGGAAATGAGACGAACTGGCAATCAGTCCATCCACTTAACCCATATCAGATTAAGTGCAAATCTACAGTAACCAACCTATCCAGCTGTTTTATTCTCCTCTTCCGCTGACACTTTGATAAGAGCAATTGCATCACATTGACATCAAGACATTCTGTTGACATTTAGCACCAAAAAGGCCCTGCAAGTGTAAGTGACAGTATAAAAATGAATGAGTTTGTTTTCTCTCAAATACAAACACACGACAAACAGGACCTAGAGAGGAAGTAGCACCTTTTAATACCTGTTACTAATCGTTTACTTTGCTTGAATAAAAAAACTGCCCTTGTTTCCCCCAAAATCTCCTTACATGCACTTTTTTGTCCTGAGGTAGCCTTTATATCAAGATGACGTCGTACCACCTAACTCTGTTCCCTGTGTGAAGTTTTGTGAGTTTTTCCTCACTTTCGGTTAGAAGGAACAAGACACTTGGCTGTCGTTTGTCATATTTATTCAACACCAGAGAATGGTACATTAGCATTTGCTTGTTTTTCATTGTCCTTTTGCAGTGGTCAAAAAAAGTCACCAGGTGGTAGTTTTCTTTGGACTCCAGGGGGCGGGGCGTTTTACAAGTATATATTATTTTCTTGTTGTCAGCTGACGCAAAGGATTCTCACTAAGTGTCCATGATTGTGATGCTGGCTGATGTAGTGGTCCTCGATTTTGTTTTAAGAATGTTTCTCAAGATGAGAATCACAACAAGCACCGTCTTCAAGGATTCAGGTTTAAGCACATGGACCGATTGCAGCCGAATAAGAGTTCGGGCTTTTTTTTTAATGAACAGGAAAAGATTTGAAGATGACTGCTAGAAAAAAAACAGCAAAGTCATGTCCAGATTTTTCTTTTTACAAGAAGCAGACTGGGCCAACTTCTACGCCGAATTCCTGATCGGGAGCACCAATGTCCATAGGAGCGATATCAATGATTGGCAGACGAGATGTTTTCGTTGTCTTATAGTCAATGACTGTCTTGCCCCATGTGCCAGTGTGTGACGTGCAGCCATCCTCGCTGACTCTGTATGTGAAGCGGCTGTTGCCCTCCGCCCTGATCTCGATGTCATTGGAGCCCTGCAGGAGCAGAGCCTTCTTCAGGTTGCCTGTGGCCTCGTCCATGTAGGCGATACTGTTCTTGCAGTGGTAGGTGATATTCTGAGAAGCCTCATTGGACATCAGGCGCATGAAGGTCAGCTGAATGTTAACATCCTCTGGATCAGAGCCATCGCTGCCATACTGGAACTACATAGAGGACACAACAGAACGTTACTTCCTGTGTTCATCAGAAGATCGTGACATATTTTGACCACTAGTGAAATCTGTTTTGGATTTTTGTTCTCG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228799 lncRNA upstream 52936 4420184 ~ 4425415 (+) True G201613
TU228795 lncRNA upstream 69579 4408518 ~ 4408772 (+) True G201609
TU228728 lncRNA upstream 128577 4286779 ~ 4349774 (+) True G201555
TU228754 lncRNA upstream 173099 4302574 ~ 4305252 (+) True G201581
TU228718 lncRNA upstream 295902 4172659 ~ 4174658 (+) True G201549
TU228830 lncRNA downstream 59521 4540299 ~ 4540501 (+) True G201639
TU228832 lncRNA downstream 65115 4545893 ~ 4546137 (+) True G201641
TU228833 lncRNA downstream 66474 4547252 ~ 4547455 (+) True G201642
TU228786 lncRNA downstream 92590 4573368 ~ 4596630 (+) True G201600
TU228793 lncRNA downstream 93557 4574335 ~ 4576940 (+) True G201607
CI01000047_04471595_04476690.mRNA mRNA upstream 1134 4471125 ~ 4477217 (+) True CI01000047_04471595_04476690
CI01000047_04222867_04253291.mRNA mRNA upstream 224640 4222682 ~ 4253711 (+) True CI01000047_04222867_04253291
CI01000047_04214987_04217836.mRNA mRNA upstream 259874 4214987 ~ 4218477 (+) True CI01000047_04214987_04217836
CI01000047_04198702_04207295.mRNA mRNA upstream 270946 4198702 ~ 4207405 (+) True CI01000047_04198702_04207295
CI01000047_04183386_04192887.mRNA mRNA upstream 285325 4183386 ~ 4193026 (+) True CI01000047_04183386_04192887
CI01000047_04582184_04586359.mRNA mRNA downstream 101226 4582004 ~ 4586796 (+) True CI01000047_04582184_04586359
CI01000047_04606043_04610846.mRNA mRNA downstream 125265 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_04663268_04663847.mRNA mRNA downstream 181537 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_04678392_04690824.mRNA mRNA downstream 197214 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_04826817_04834995.mRNA mRNA downstream 346039 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
TU228535 other upstream 776491 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1390164 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1900354 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2159389 2316863 ~ 2318962 (+) True G200003
TU226744 other upstream 2725514 1751469 ~ 1752837 (+) True G199784
TU229634 other downstream 2334939 6815717 ~ 6816118 (+) True G202382

Expression Profile